Literature DB >> 30661853

Collection of Continuous Rotation MicroED Data from Ion Beam-Milled Crystals of Any Size.

Michael W Martynowycz1, Wei Zhao2, Johan Hattne1, Grant J Jensen3, Tamir Gonen4.   

Abstract

Microcrystal electron diffraction (MicroED) allows for macromolecular structure solution from nanocrystals. To create crystals of suitable size for MicroED data collection, sample preparation typically involves sonication or pipetting a slurry of crystals from a crystallization drop. The resultant crystal fragments are fragile and the quality of the data that can be obtained from them is sensitive to subsequent sample preparation for cryoelectron microscopy as interactions in the water-air interface can damage crystals during blotting. Here, we demonstrate the use of a focused ion beam to generate lamellae of macromolecular protein crystals for continuous rotation MicroED that are of ideal thickness, easy to locate, and require no blotting optimization. In this manner, crystals of nearly any size may be scooped and milled to desired dimensions prior to data collection, thus streamlining the methodology for sample preparation for MicroED.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Electron cryo-microscopy (cryoEM); FIB-SEM; MicroED; electron crystallography; electron diffraction

Mesh:

Substances:

Year:  2019        PMID: 30661853      PMCID: PMC6476546          DOI: 10.1016/j.str.2018.12.003

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  19 in total

1.  An improved cryo-FIB method for fabrication of frozen hydrated lamella.

Authors:  Jianguo Zhang; Gang Ji; Xiaojun Huang; Wei Xu; Fei Sun
Journal:  J Struct Biol       Date:  2016-02-12       Impact factor: 2.867

2.  Visualizing the molecular sociology at the HeLa cell nuclear periphery.

Authors:  Julia Mahamid; Stefan Pfeffer; Miroslava Schaffer; Elizabeth Villa; Radostin Danev; Luis Kuhn Cuellar; Friedrich Förster; Anthony A Hyman; Jürgen M Plitzko; Wolfgang Baumeister
Journal:  Science       Date:  2016-02-26       Impact factor: 47.728

3.  MicroED Structure of Au146(p-MBA)57 at Subatomic Resolution Reveals a Twinned FCC Cluster.

Authors:  Sandra Vergara; Dylan A Lukes; Michael W Martynowycz; Ulises Santiago; Germán Plascencia-Villa; Simon C Weiss; M Jason de la Cruz; David M Black; Marcos M Alvarez; Xochitl López-Lozano; Christopher O Barnes; Guowu Lin; Hans-Christian Weissker; Robert L Whetten; Tamir Gonen; Miguel Jose Yacaman; Guillermo Calero
Journal:  J Phys Chem Lett       Date:  2017-10-31       Impact factor: 6.475

4.  From electron crystallography of 2D crystals to MicroED of 3D crystals.

Authors:  Michael W Martynowycz; Tamir Gonen
Journal:  Curr Opin Colloid Interface Sci       Date:  2018-01-31       Impact factor: 6.448

5.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

6.  MicroED data collection and processing.

Authors:  Johan Hattne; Francis E Reyes; Brent L Nannenga; Dan Shi; M Jason de la Cruz; Andrew G W Leslie; Tamir Gonen
Journal:  Acta Crystallogr A Found Adv       Date:  2015-07-01       Impact factor: 2.290

7.  Three-dimensional electron crystallography of protein microcrystals.

Authors:  Dan Shi; Brent L Nannenga; Matthew G Iadanza; Tamir Gonen
Journal:  Elife       Date:  2013-11-19       Impact factor: 8.140

8.  Modeling truncated pixel values of faint reflections in MicroED images.

Authors:  Johan Hattne; Dan Shi; M Jason de la Cruz; Francis E Reyes; Tamir Gonen
Journal:  J Appl Crystallogr       Date:  2016-05-11       Impact factor: 3.304

9.  Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.

Authors:  M Jason de la Cruz; Johan Hattne; Dan Shi; Paul Seidler; Jose Rodriguez; Francis E Reyes; Michael R Sawaya; Duilio Cascio; Simon C Weiss; Sun Kyung Kim; Cynthia S Hinck; Andrew P Hinck; Guillermo Calero; David Eisenberg; Tamir Gonen
Journal:  Nat Methods       Date:  2017-02-13       Impact factor: 28.547

10.  In situ protein micro-crystal fabrication by cryo-FIB for electron diffraction.

Authors:  Xinmei Li; Shuangbo Zhang; Jianguo Zhang; Fei Sun
Journal:  Biophys Rep       Date:  2018-11-14
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  23 in total

1.  Qualitative Analyses of Polishing and Precoating FIB Milled Crystals for MicroED.

Authors:  Michael W Martynowycz; Wei Zhao; Johan Hattne; Grant J Jensen; Tamir Gonen
Journal:  Structure       Date:  2019-08-15       Impact factor: 5.006

2.  MicroED Sample Preparation and Data Collection For Protein Crystals.

Authors:  Guanhong Bu; Brent L Nannenga
Journal:  Methods Mol Biol       Date:  2021

3.  2D Electron Crystallography of Membrane Protein Single-, Double-, and Multi-Layered Ordered Arrays.

Authors:  Matthew C Johnson; Yusuf M Uddin; Kasahun Neselu; Ingeborg Schmidt-Krey
Journal:  Methods Mol Biol       Date:  2021

4.  Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography.

Authors:  Felix R Wagner; Reika Watanabe; Ruud Schampers; Digvijay Singh; Hans Persoon; Miroslava Schaffer; Peter Fruhstorfer; Jürgen Plitzko; Elizabeth Villa
Journal:  Nat Protoc       Date:  2020-05-13       Impact factor: 13.491

Review 5.  The cryo-EM method microcrystal electron diffraction (MicroED).

Authors:  Brent L Nannenga; Tamir Gonen
Journal:  Nat Methods       Date:  2019-04-29       Impact factor: 28.547

6.  MicroED structure of the human adenosine receptor determined from a single nanocrystal in LCP.

Authors:  Michael W Martynowycz; Anna Shiriaeva; Xuanrui Ge; Johan Hattne; Brent L Nannenga; Vadim Cherezov; Tamir Gonen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-07       Impact factor: 11.205

Review 7.  Electron Diffraction of 3D Molecular Crystals.

Authors:  Ambarneil Saha; Shervin S Nia; José A Rodríguez
Journal:  Chem Rev       Date:  2022-08-15       Impact factor: 72.087

8.  Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED.

Authors:  Lan Zhu; Guanhong Bu; Liang Jing; Dan Shi; Ming-Yue Lee; Tamir Gonen; Wei Liu; Brent L Nannenga
Journal:  Structure       Date:  2020-07-30       Impact factor: 5.006

9.  Studying Membrane Protein Structures by MicroED.

Authors:  Michael W Martynowycz; Tamir Gonen
Journal:  Methods Mol Biol       Date:  2021

Review 10.  Beyond protein structure determination with MicroED.

Authors:  Chi Nguyen; Tamir Gonen
Journal:  Curr Opin Struct Biol       Date:  2020-06-28       Impact factor: 6.809

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