Literature DB >> 33877626

Studying Membrane Protein Structures by MicroED.

Michael W Martynowycz1,2,3, Tamir Gonen4,5,6.   

Abstract

Microcrystal electron diffraction (MicroED) enables atomic resolution structures to be determined from vanishingly small crystals. Soluble proteins typically grow crystals that are tens to hundreds of microns in size for X-ray crystallography. But membrane protein crystals often grow crystals that are too small for X-ray diffraction and yet too large for MicroED. These crystals are often formed in thick, viscous media that challenge traditional cryoEM grid preparation. Here, we describe two approaches for preparing membrane protein crystals for MicroED data collection: application of a crystal slurry directly to EM grids, and focused ion beam milling in a Scanning Electron Microscope (FIB-SEM). We summarize the case of preparing an ion channel, NaK, and the workflow of focused ion-beam milling. By milling away the excess media and crystalline material, crystals of any size may be prepared for MicroED. Finally, an energy filter may be used to help minimize inelastic scattering leading to lower noise on recorded images.

Entities:  

Keywords:  CryoEM; Energy filter; FIB milling; Membrane proteins; MicroED; Microcrystal electron diffraction

Mesh:

Substances:

Year:  2021        PMID: 33877626     DOI: 10.1007/978-1-0716-1394-8_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  42 in total

1.  Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.

Authors:  Johan Hattne; Dan Shi; Calina Glynn; Chih-Te Zee; Marcus Gallagher-Jones; Michael W Martynowycz; Jose A Rodriguez; Tamir Gonen
Journal:  Structure       Date:  2018-04-26       Impact factor: 5.006

2.  Electron crystallography of ultrathin 3D protein crystals: atomic model with charges.

Authors:  Koji Yonekura; Kazuyuki Kato; Mitsuo Ogasawara; Masahiro Tomita; Chikashi Toyoshima
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-17       Impact factor: 11.205

3.  Lipid-protein interactions in double-layered two-dimensional AQP0 crystals.

Authors:  Tamir Gonen; Yifan Cheng; Piotr Sliz; Yoko Hiroaki; Yoshinori Fujiyoshi; Stephen C Harrison; Thomas Walz
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

4.  Three-dimensional structure of a human connexin26 gap junction channel reveals a plug in the vestibule.

Authors:  Atsunori Oshima; Kazutoshi Tani; Yoko Hiroaki; Yoshinori Fujiyoshi; Gina E Sosinsky
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-05       Impact factor: 11.205

5.  Phasing electron diffraction data by molecular replacement: strategy for structure determination and refinement.

Authors:  Goragot Wisedchaisri; Tamir Gonen
Journal:  Methods Mol Biol       Date:  2013

6.  The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination.

Authors:  Christopher G Jones; Michael W Martynowycz; Johan Hattne; Tyler J Fulton; Brian M Stoltz; Jose A Rodriguez; Hosea M Nelson; Tamir Gonen
Journal:  ACS Cent Sci       Date:  2018-11-02       Impact factor: 14.553

7.  Structure of catalase determined by MicroED.

Authors:  Brent L Nannenga; Dan Shi; Johan Hattne; Francis E Reyes; Tamir Gonen
Journal:  Elife       Date:  2014-10-10       Impact factor: 8.140

8.  High-resolution structure determination by continuous-rotation data collection in MicroED.

Authors:  Brent L Nannenga; Dan Shi; Andrew G W Leslie; Tamir Gonen
Journal:  Nat Methods       Date:  2014-08-03       Impact factor: 28.547

9.  Sub-ångström cryo-EM structure of a prion protofibril reveals a polar clasp.

Authors:  Marcus Gallagher-Jones; Calina Glynn; David R Boyer; Michael W Martynowycz; Evelyn Hernandez; Jennifer Miao; Chih-Te Zee; Irina V Novikova; Lukasz Goldschmidt; Heather T McFarlane; Gustavo F Helguera; James E Evans; Michael R Sawaya; Duilio Cascio; David S Eisenberg; Tamir Gonen; Jose A Rodriguez
Journal:  Nat Struct Mol Biol       Date:  2018-01-15       Impact factor: 15.369

10.  MicroED structure of the NaK ion channel reveals a Na+ partition process into the selectivity filter.

Authors:  Shian Liu; Tamir Gonen
Journal:  Commun Biol       Date:  2018-05-03
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