Literature DB >> 31935541

Evolving understanding of HIV-1 reverse transcriptase structure, function, inhibition, and resistance.

Francesc Xavier Ruiz1, Eddy Arnold2.   

Abstract

The essential role of reverse transcription in the HIV life cycle is illustrated by the fact that half of the ∼30 FDA-approved drugs for HIV treatment target HIV-1 reverse transcriptase (RT). Even though more than 160 structures of RT deposited in the Protein Data Bank (PDB) have revealed the molecular architecture of RT in great detail, some key states of RT function and inhibition remain still unknown. Recent structures of RT initiation complexes, RT poised for RNA hydrolysis, and RT with approved drugs and investigational compounds have provided a deeper understanding of RT function and inhibition, suggesting novel avenues for targeting this central enzyme of HIV.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID: 31935541      PMCID: PMC7596924          DOI: 10.1016/j.sbi.2019.11.011

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  60 in total

1.  Steered molecular dynamics simulation on the binding of NNRTI to HIV-1 RT.

Authors:  Lingling Shen; Jianhua Shen; Xiaomin Luo; Feng Cheng; Yechun Xu; Kaixian Chen; Edward Arnold; Jianping Ding; Hualiang Jiang
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

2.  Structural basis of HIV inhibition by translocation-defective RT inhibitor 4'-ethynyl-2-fluoro-2'-deoxyadenosine (EFdA).

Authors:  Zhe Li Salie; Karen A Kirby; Eleftherios Michailidis; Bruno Marchand; Kamalendra Singh; Lisa C Rohan; Eiichi N Kodama; Hiroaki Mitsuya; Michael A Parniak; Stefan G Sarafianos
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-03       Impact factor: 11.205

3.  Indolopyridones inhibit human immunodeficiency virus reverse transcriptase with a novel mechanism of action.

Authors:  Dirk Jochmans; Jérôme Deval; Bart Kesteleyn; Herwig Van Marck; Eva Bettens; Inky De Baere; Pascale Dehertogh; Tania Ivens; Marcia Van Ginderen; Bertrand Van Schoubroeck; Maryam Ehteshami; Piet Wigerinck; Matthias Götte; Kurt Hertogs
Journal:  J Virol       Date:  2006-10-04       Impact factor: 5.103

4.  Discovery of Novel Diarylpyrimidine Derivatives as Potent HIV-1 NNRTIs Targeting the "NNRTI Adjacent" Binding Site.

Authors:  Zhipeng Huo; Heng Zhang; Dongwei Kang; Zhongxia Zhou; Gaochan Wu; Samuel Desta; Xiaofang Zuo; Zhao Wang; Lanlan Jing; Xiao Ding; Dirk Daelemans; Erik De Clercq; Christophe Pannecouque; Peng Zhan; Xinyong Liu
Journal:  ACS Med Chem Lett       Date:  2018-02-27       Impact factor: 4.345

5.  Design, Conformation, and Crystallography of 2-Naphthyl Phenyl Ethers as Potent Anti-HIV Agents.

Authors:  Won-Gil Lee; Albert H Chan; Krasimir A Spasov; Karen S Anderson; William L Jorgensen
Journal:  ACS Med Chem Lett       Date:  2016-10-31       Impact factor: 4.345

6.  Structural insights into the recognition of nucleoside reverse transcriptase inhibitors by HIV-1 reverse transcriptase: First crystal structures with reverse transcriptase and the active triphosphate forms of lamivudine and emtricitabine.

Authors:  Nicole Bertoletti; Albert H Chan; Raymond F Schinazi; Y Whitney Yin; Karen S Anderson
Journal:  Protein Sci       Date:  2019-08-06       Impact factor: 6.725

7.  High-resolution structures of HIV-1 reverse transcriptase/TMC278 complexes: strategic flexibility explains potency against resistance mutations.

Authors:  Kalyan Das; Joseph D Bauman; Arthur D Clark; Yulia V Frenkel; Paul J Lewi; Aaron J Shatkin; Stephen H Hughes; Eddy Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-29       Impact factor: 11.205

8.  Coordination between the polymerase and RNase H activity of HIV-1 reverse transcriptase.

Authors:  Malgorzata Figiel; Miroslav Krepl; Jaroslaw Poznanski; Agnieszka Golab; Jirí Šponer; Marcin Nowotny
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

Review 9.  Long-Acting Anti-HIV Drugs Targeting HIV-1 Reverse Transcriptase and Integrase.

Authors:  Kamal Singh; Stefan G Sarafianos; Anders Sönnerborg
Journal:  Pharmaceuticals (Basel)       Date:  2019-04-20

10.  Structural basis for potent and broad inhibition of HIV-1 RT by thiophene[3,2-d]pyrimidine non-nucleoside inhibitors.

Authors:  Yang Yang; Dongwei Kang; Laura A Nguyen; Zachary B Smithline; Christophe Pannecouque; Peng Zhan; Xinyong Liu; Thomas A Steitz
Journal:  Elife       Date:  2018-07-25       Impact factor: 8.140

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  8 in total

1.  Doravirine and Islatravir Have Complementary Resistance Profiles and Create a Combination with a High Barrier to Resistance.

Authors:  Ming-Tain Lai; Meizhen Feng; Min Xu; Winnie Ngo; Tracy L Diamond; Carey Hwang; Jay A Grobler; Daria J Hazuda; Ernest Asante-Appiah
Journal:  Antimicrob Agents Chemother       Date:  2022-05-02       Impact factor: 5.191

Review 2.  Structural basis of HIV inhibition by L-nucleosides: Opportunities for drug development and repurposing.

Authors:  Francesc X Ruiz; Anthony Hoang; Christopher R Dilmore; Jeffrey J DeStefano; Eddy Arnold
Journal:  Drug Discov Today       Date:  2022-02-23       Impact factor: 8.369

Review 3.  Avoiding Drug Resistance in HIV Reverse Transcriptase.

Authors:  Maria E Cilento; Karen A Kirby; Stefan G Sarafianos
Journal:  Chem Rev       Date:  2021-01-28       Impact factor: 60.622

4.  Analysis and Molecular Determinants of HIV RNase H Cleavage Specificity at the PPT/U3 Junction.

Authors:  Mar Álvarez; Enrique Sapena-Ventura; Joanna Luczkowiak; Samara Martín-Alonso; Luis Menéndez-Arias
Journal:  Viruses       Date:  2021-01-18       Impact factor: 5.048

5.  Integrative structural biology studies of HIV-1 reverse transcriptase binding to a high-affinity DNA aptamer.

Authors:  Steve Tuske; Jie Zheng; Erik D Olson; Francesc X Ruiz; Bruce D Pascal; Anthony Hoang; Joseph D Bauman; Kalyan Das; Jeffrey J DeStefano; Karin Musier-Forsyth; Patrick R Griffin; Eddy Arnold
Journal:  Curr Res Struct Biol       Date:  2020-06-30

6.  High-resolution view of HIV-1 reverse transcriptase initiation complexes and inhibition by NNRTI drugs.

Authors:  Betty Ha; Kevin P Larsen; Jingji Zhang; Ziao Fu; Elizabeth Montabana; Lynnette N Jackson; Dong-Hua Chen; Elisabetta Viani Puglisi
Journal:  Nat Commun       Date:  2021-05-04       Impact factor: 14.919

7.  Cryo-EM structure of the HIV-1 Pol polyprotein provides insights into virion maturation.

Authors:  Jerry Joe E K Harrison; Dario Oliveira Passos; Jessica F Bruhn; Joseph D Bauman; Lynda Tuberty; Jeffrey J DeStefano; Francesc Xavier Ruiz; Dmitry Lyumkis; Eddy Arnold
Journal:  Sci Adv       Date:  2022-07-06       Impact factor: 14.957

8.  Human endogenous retrovirus-K (HERV-K) reverse transcriptase (RT) structure and biochemistry reveals remarkable similarities to HIV-1 RT and opportunities for HERV-K-specific inhibition.

Authors:  Eric T Baldwin; Matthias Götte; Egor P Tchesnokov; Eddy Arnold; Margit Hagel; Charles Nichols; Pam Dossang; Marieke Lamers; Paul Wan; Stefan Steinbacher; Donna L Romero
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-30       Impact factor: 12.779

  8 in total

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