| Literature DB >> 30623603 |
Feimeng An1,2, Jiaqi Wang1,2, Hongyan Gao2, Chang Liu1,2, Ye Tian1,2, Tianbo Jin3, Wanlin Liu2, Jianzhong Wang2.
Abstract
AIM: Osteonecrosis of the femoral head (ONFH) refers to bony changes caused by osteocyte death under the effects of complicated factors, which is caused by genetic factors and certain risk factors. Our study aimed to explore whether IL1R1/IL1R2 polymorphisms influenced ONFH risk in the Chinese Han population.Entities:
Keywords: zzm321990IL1R1zzm321990; zzm321990IL1R2zzm321990; zzm321990ONFHzzm321990; Chinese Han population; case-control study; genetic polymorphism
Mesh:
Substances:
Year: 2019 PMID: 30623603 PMCID: PMC6418375 DOI: 10.1002/mgg3.557
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
General characteristics the of this study population
| Variables | Cases ( | % | Controls ( | % |
|
|---|---|---|---|---|---|
| Sex | |||||
| Male | 173 | 60.50 | 265 | 60.10 | >0.05 |
| Female | 113 | 39.50 | 176 | 39.90 | |
| Age, year (mean ± | 41.83 ± 13.11 | 44.60 ± 11.55 | <0.05 | ||
p‐values were calculated from two‐sided chi‐squared test/Fisher's exact test.
p ≤ 0.05 was statistically significant.
Allele frequencies in cases and controls and odds ratio estimates for ONFH risk
| SNP | Gene(s) | Band | Alleles A/B | MAF |
| OR (95% CI) |
| |
|---|---|---|---|---|---|---|---|---|
| Case | Control | |||||||
| rs11674595 |
| 2q11.2 | C/T | 0.267 | 0.211 | 0.250 | 1.37 (1.07–1.75) |
|
| rs4851527 |
| 2q11.2 | A/G | 0.259 | 0.289 | 0.486 | 0.86 (0.68–1.09) | 0.214 |
| rs719250 |
| 2q11.2 | T/G | 0.333 | 0.317 | 0.912 | 1.07 (0.86–1.35) | 0.533 |
| rs3218896 |
| 2q11.2 | C/T | 0.173 | 0.150 | 0.351 | 1.18 (0.89–1.57) | 0.252 |
| rs3218977 |
| 2q11.2 | G/A | 0.263 | 0.251 | 1.000 | 1.07 (0.84–1.36) | 0.592 |
| rs2072472 |
| 2q11.2 | G/A | 0.208 | 0.200 | 0.766 | 1.05 (0.81–1.37) | 0.696 |
| rs10490571 |
| 2q12.1 | T/C | 0.215 | 0.168 | 0.061 | 1.35 (1.04–1.77) |
|
| rs12712127 |
| 2q12.1 | G/A | 0.290 | 0.215 |
| 1.50 (1.17–1.91) | 0.001 |
| rs956730 |
| 2q12.1 | A/G | 0.248 | 0.250 | 0.016 | 0.99 (0.78–1.26) | 0.940 |
| rs3917225 |
| 2q12.1 | T/C | 0.419 | 0.348 | 0.074 | 1.35 (1.09–1.68) |
|
| rs3917318 |
| 2q12.1 | G/A | 0.498 | 0.497 | 0.045 | 1.01 (0.82–1.24) | 0.951 |
SNP: single‐nucleotide polymorphism; MAF: minor allele frequency; HWE: Hardy–Weinberg equilibrium; OR: odds ratio; CI: confidence interval.
In bold, p < 0.05 indicates statistical significance
In bold, p‐HWE < 0.05 be excluded.
Relationships between IL1R2 and IL1R1polymorphism and ONFH risk
| SNP | Model | Genotype | Control | Case | Before adjusted | After adjusted | AIC | BIC | ||
|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| |||||||
| rs11674595 | Codominant | T/T | 269 (61.3%) | 147 (51.4%) | 1 |
| 1 |
| 971.5 | 985.3 |
| C/T | 155 (35.3%) | 125 (43.7%) |
|
| ||||||
| C/C | 15 (3.4%) | 14 (4.9%) | 1.71 (0.80–3.64) | 1.60 (0.75–3.42) | ||||||
| Dominant | T/T | 269 (61.3%) | 147 (51.4%) | 1 |
| 1 |
| 969.6 | 978.8 | |
| C/T‐C/C | 170 (38.7%) | 139 (48.6%) |
|
| ||||||
| Recessive | T/T‐C/T | 424 (96.6%) | 272 (95.1%) | 1 | 0.33 | 1 | 0.420 | 975.6 | 984.7 | |
| C/C | 15 (3.4%) | 14 (4.9%) | 1.45 (0.69–3.06) | 1.36 (0.64–2.88) | ||||||
| Log‐additive | – | – | – |
|
|
|
| 969.8 | 979 | |
| rs10490571 | Codominant | C/C | 310 (70.5%) | 172 (60.1%) | 1 |
| 1 |
| 969.1 | 982.9 |
| C/T | 112 (25.4%) | 105 (36.7%) |
|
| ||||||
| T/T | 18 (4.1%) | 9 (3.1%) | 0.90 (0.40–2.05) | 0.88 (0.39–2.01) | ||||||
| Dominant | C/C | 310 (70.5%) | 172 (60.1%) | 1 |
| 1 |
| 969.3 | 978.5 | |
| C/T‐T/T | 130 (29.6%) | 114 (39.9%) |
|
| ||||||
| Recessive | C/C‐C/T | 422 (95.9%) | 277 (96.8%) | 1 | 0.51 | 1 | 0.470 | 977.1 | 986.3 | |
| T/T | 18 (4.1%) | 9 (3.1%) | 0.76 (0.34–1.72) | 0.74 (0.33–1.69) | ||||||
| Log‐additive | – | – | – |
|
|
|
| 972.6 | 981.8 | |
| rs3917225 | Codominant | A/A | 196 (44.5%) | 98 (34.4%) | 1 |
| 1 |
| 969.9 | 983.6 |
| A/G | 182 (41.4%) | 135 (47.4%) |
|
| ||||||
| G/G | 62 (14.1%) | 52 (18.2%) |
|
| ||||||
| Dominant | A/A | 196 (44.5%) | 98 (34.4%) | 1 |
| 1 |
| 968.2 | 977.4 | |
| A/G‐G/G | 244 (55.5%) | 187 (65.6%) |
|
| ||||||
| Recessive | A/A‐A/G | 378 (85.9%) | 233 (81.8%) | 1 | 0.14 | 1 | 0.170 | 973.4 | 982.6 | |
| G/G | 62 (14.1%) | 52 (18.2%) | 1.36 (0.91–2.04) | 1.33 (0.89–2.00) | ||||||
| Log‐additive | – | – | – |
|
|
|
| 968.6 | 977.8 | |
SNP: single‐nucleotide polymorphism; OR: odds ratio; 95% CI: 95% confidence interval.
p‐values were calculated from unconditional logistic regression analysis.
p‐values were calculated by unconditional logistic regression analysis with adjustments for age and gender.
The bold values and p ≤ 0.05 indicate statistical significance.
Figure 1Linkage disequilibrium plots containing four SNPs from
Haplotype analysis results in this study
| Block | SNPs | Haplotype | Freq | Before adjusted | After adjusted | ||
|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| ||||
| Block 1 | rs4851527/rs719250/rs3218896 | GCT | 0.4011 | 1 | – | 1 | – |
| ACT | 0.2749 | 0.88 (0.67–1.14) | 0.33 | 0.87 (0.67–1.14) | 0.32 | ||
| GTT | 0.1638 | 0.93 (0.68–1.27) | 0.65 | 0.93 (0.68–1.28) | 0.68 | ||
| GTC | 0.1583 | 1.13 (0.82–1.54) | 0.45 | 1.13 (0.82–1.55) | 0.45 | ||
| Block 2 | rs3218977/rs2072472 | AA | 0.5411 | 1 | – | 1 | – |
| GA | 0.2555 | 1.09 (0.85–1.41) | 0.51 | 1.08 (0.84–1.40) | 0.55 | ||
| AG | 0.2035 | 1.09 (0.82–1.43) | 0.56 | 1.07 (0.81–1.42) | 0.63 | ||
SNP: single‐nucleotide polymorphism; OR: odds ratio; CI: confidence interval; pa: Adjusted by gender and age.