Literature DB >> 30601681

X-Ray Free-Electron Lasers for the Structure and Dynamics of Macromolecules.

Henry N Chapman1,2,3.   

Abstract

X-ray free-electron lasers provide femtosecond-duration pulses of hard X-rays with a peak brightness approximately one billion times greater than is available at synchrotron radiation facilities. One motivation for the development of such X-ray sources was the proposal to obtain structures of macromolecules, macromolecular complexes, and virus particles, without the need for crystallization, through diffraction measurements of single noncrystalline objects. Initial explorations of this idea and of outrunning radiation damage with femtosecond pulses led to the development of serial crystallography and the ability to obtain high-resolution structures of small crystals without the need for cryogenic cooling. This technique allows the understanding of conformational dynamics and enzymatics and the resolution of intermediate states in reactions over timescales of 100 fs to minutes. The promise of more photons per atom recorded in a diffraction pattern than electrons per atom contributing to an electron micrograph may enable diffraction measurements of single molecules, although challenges remain.

Entities:  

Keywords:  FEL; coherent diffraction; free-electron laser; radiation damage; serial crystallography; structure determination; time-resolved crystallography

Mesh:

Substances:

Year:  2019        PMID: 30601681     DOI: 10.1146/annurev-biochem-013118-110744

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  30 in total

Review 1.  Tracking RNA with light: selection, structure, and design of fluorescence turn-on RNA aptamers.

Authors:  Robert J Trachman; Adrian R Ferré-D'Amaré
Journal:  Q Rev Biophys       Date:  2019-08-19       Impact factor: 5.318

2.  Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Authors:  Pierre Aller; Allen M Orville
Journal:  Methods Mol Biol       Date:  2021

3.  3D printing of gas-dynamic virtual nozzles and optical characterization of high-speed microjets.

Authors:  Reza Nazari; Sahba Zaare; Roberto C Alvarez; Konstantinos Karpos; Trent Engelman; Caleb Madsen; Garrett Nelson; John C H Spence; Uwe Weierstall; Ronald J Adrian; Richard A Kirian
Journal:  Opt Express       Date:  2020-07-20       Impact factor: 3.894

4.  Transcription with a laser: Radiation-damage-free diffraction of RNA Polymerase II crystals.

Authors:  Guowu Lin; Simon C Weiss; Sandra Vergara; Carlos Camacho; Guillermo Calero
Journal:  Methods       Date:  2019-04-25       Impact factor: 3.608

5.  Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser.

Authors:  Christopher Jones; Brandon Tran; Chelsie Conrad; Jason Stagno; Robert Trachman; Pontus Fischer; Alke Meents; Adrian Ferré-D'Amaré
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-06-28       Impact factor: 1.056

6.  High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States.

Authors:  Vivek Srinivas; Rahul Banerjee; Hugo Lebrette; Jason C Jones; Oskar Aurelius; In-Sik Kim; Cindy C Pham; Sheraz Gul; Kyle D Sutherlin; Asmit Bhowmick; Juliane John; Esra Bozkurt; Thomas Fransson; Pierre Aller; Agata Butryn; Isabel Bogacz; Philipp Simon; Stephen Keable; Alexander Britz; Kensuke Tono; Kyung Sook Kim; Sang-Youn Park; Sang Jae Lee; Jaehyun Park; Roberto Alonso-Mori; Franklin D Fuller; Alexander Batyuk; Aaron S Brewster; Uwe Bergmann; Nicholas K Sauter; Allen M Orville; Vittal K Yachandra; Junko Yano; John D Lipscomb; Jan Kern; Martin Högbom
Journal:  J Am Chem Soc       Date:  2020-08-05       Impact factor: 15.419

7.  Co-crystal structure of the iMango-III fluorescent RNA aptamer using an X-ray free-electron laser.

Authors:  Robert J Trachman; Jason R Stagno; Chelsie Conrad; Christopher P Jones; Pontus Fischer; Alke Meents; Yun Xing Wang; Adrian R Ferré-D'Amaré
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-08-02       Impact factor: 1.056

Review 8.  The many faces of RNA-based RNase P, an RNA-world relic.

Authors:  Hong-Duc Phan; Lien B Lai; Walter J Zahurancik; Venkat Gopalan
Journal:  Trends Biochem Sci       Date:  2021-09-09       Impact factor: 13.807

9.  An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.

Authors:  Agata Butryn; Philipp S Simon; Pierre Aller; Philip Hinchliffe; Ramzi N Massad; Gabriel Leen; Catherine L Tooke; Isabel Bogacz; In-Sik Kim; Asmit Bhowmick; Aaron S Brewster; Nicholas E Devenish; Jürgen Brem; Jos J A G Kamps; Pauline A Lang; Patrick Rabe; Danny Axford; John H Beale; Bradley Davy; Ali Ebrahim; Julien Orlans; Selina L S Storm; Tiankun Zhou; Shigeki Owada; Rie Tanaka; Kensuke Tono; Gwyndaf Evans; Robin L Owen; Frances A Houle; Nicholas K Sauter; Christopher J Schofield; James Spencer; Vittal K Yachandra; Junko Yano; Jan F Kern; Allen M Orville
Journal:  Nat Commun       Date:  2021-07-22       Impact factor: 14.919

Review 10.  Recent Advances and Future Perspectives on Microfluidic Mix-and-Jet Sample Delivery Devices.

Authors:  Majid Hejazian; Eugeniu Balaur; Brian Abbey
Journal:  Micromachines (Basel)       Date:  2021-05-07       Impact factor: 2.891

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