Literature DB >> 34511335

The many faces of RNA-based RNase P, an RNA-world relic.

Hong-Duc Phan1, Lien B Lai2, Walter J Zahurancik3, Venkat Gopalan4.   

Abstract

RNase P is an essential enzyme that catalyzes removal of the 5' leader from precursor transfer RNAs. The ribonucleoprotein (RNP) form of RNase P is present in all domains of life and comprises a single catalytic RNA (ribozyme) and a variable number of protein cofactors. Recent cryo-electron microscopy structures of representative archaeal and eukaryotic (nuclear) RNase P holoenzymes bound to tRNA substrate/product provide high-resolution detail on subunit organization, topology, and substrate recognition in these large, multisubunit catalytic RNPs. These structures point to the challenges in understanding how proteins modulate the RNA functional repertoire and how the structure of an ancient RNA-based catalyst was reshaped during evolution by new macromolecular associations that were likely necessitated by functional/regulatory coupling.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  catalytic ribonucleoprotein; protein-aided RNA catalysis; ribozyme; tRNA processing

Mesh:

Substances:

Year:  2021        PMID: 34511335      PMCID: PMC8595784          DOI: 10.1016/j.tibs.2021.07.005

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  99 in total

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Authors:  Yong Li; Sidney Altman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-29       Impact factor: 11.205

2.  Cell biology. Irremediable complexity?

Authors:  Michael W Gray; Julius Lukes; John M Archibald; Patrick J Keeling; W Ford Doolittle
Journal:  Science       Date:  2010-11-12       Impact factor: 47.728

3.  Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA.

Authors:  Takamasa Teramoto; Kipchumba J Kaitany; Yoshimitsu Kakuta; Makoto Kimura; Carol A Fierke; Traci M Tanaka Hall
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

4.  RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.

Authors:  Johann Holzmann; Peter Frank; Esther Löffler; Keiryn L Bennett; Christopher Gerner; Walter Rossmanith
Journal:  Cell       Date:  2008-10-31       Impact factor: 41.582

5.  Rpp29 regulates histone H3.3 chromatin assembly through transcriptional mechanisms.

Authors:  Prashanth Krishna Shastrula; Peder J Lund; Benjamin A Garcia; Susan M Janicki
Journal:  J Biol Chem       Date:  2018-06-19       Impact factor: 5.157

Review 6.  Roles of RNase P and Its Subunits.

Authors:  Nayef Jarrous
Journal:  Trends Genet       Date:  2017-07-08       Impact factor: 11.639

7.  Phylogenetic comparative mutational analysis of the base-pairing between RNase P RNA and its substrate.

Authors:  S G Svärd; U Kagardt; L A Kirsebom
Journal:  RNA       Date:  1996-05       Impact factor: 4.942

8.  Conformational change in the Bacillus subtilis RNase P holoenzyme--pre-tRNA complex enhances substrate affinity and limits cleavage rate.

Authors:  John Hsieh; Carol A Fierke
Journal:  RNA       Date:  2009-06-23       Impact factor: 4.942

9.  Retrieving functional pathways of biomolecules from single-particle snapshots.

Authors:  Ali Dashti; Ghoncheh Mashayekhi; Mrinal Shekhar; Danya Ben Hail; Salah Salah; Peter Schwander; Amedee des Georges; Abhishek Singharoy; Joachim Frank; Abbas Ourmazd
Journal:  Nat Commun       Date:  2020-09-18       Impact factor: 14.919

10.  RNase P protein subunit Rpp29 represses histone H3.3 nucleosome deposition.

Authors:  Alyshia Newhart; Sara Lawrence Powers; Prashanth Krishna Shastrula; Isabel Sierra; Lucy M Joo; James E Hayden; Andrew R Cohen; Susan M Janicki
Journal:  Mol Biol Cell       Date:  2016-02-03       Impact factor: 4.138

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  4 in total

1.  Structural basis for impaired 5' processing of a mutant tRNA associated with defects in neuronal homeostasis.

Authors:  Lien B Lai; Stella M Lai; Eric S Szymanski; Mridu Kapur; Edric K Choi; Hashim M Al-Hashimi; Susan L Ackerman; Venkat Gopalan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-01       Impact factor: 12.779

2.  Eukaryotic tRNA sequences present conserved and amino acid-specific structural signatures.

Authors:  Eric Westhof; Bryan Thornlow; Patricia P Chan; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2022-04-22       Impact factor: 19.160

3.  Structural and mechanistic basis for recognition of alternative tRNA precursor substrates by bacterial ribonuclease P.

Authors:  Jiaqiang Zhu; Wei Huang; Jing Zhao; Loc Huynh; Derek J Taylor; Michael E Harris
Journal:  Nat Commun       Date:  2022-08-31       Impact factor: 17.694

4.  Elucidation of structure-function relationships in Methanocaldococcus jannaschii RNase P, a multi-subunit catalytic ribonucleoprotein.

Authors:  Hong-Duc Phan; Andrew S Norris; Chen Du; Kye Stachowski; Bela H Khairunisa; Vaishnavi Sidharthan; Biswarup Mukhopadhyay; Mark P Foster; Vicki H Wysocki; Venkat Gopalan
Journal:  Nucleic Acids Res       Date:  2022-08-12       Impact factor: 19.160

  4 in total

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