| Literature DB >> 30571601 |
Adelaide M Arruda-Olson1, Naveed Afzal2, Vishnu Priya Mallipeddi1, Ahmad Said1, Homam Moussa Pacha1, Sungrim Moon2, Alisha P Chaudhry1, Christopher G Scott2, Kent R Bailey2, Thom W Rooke1, Paul W Wennberg1, Vinod C Kaggal2, Gustavo S Oderich3, Iftikhar J Kullo1, Rick A Nishimura1, Rajeev Chaudhry4, Hongfang Liu2.
Abstract
Background Automated individualized risk prediction tools linked to electronic health records ( EHR s) are not available for management of patients with peripheral arterial disease. The goal of this study was to create a prognostic tool for patients with peripheral arterial disease using data elements automatically extracted from an EHR to enable real-time and individualized risk prediction at the point of care. Methods and Results A previously validated phenotyping algorithm was deployed to an EHR linked to the Rochester Epidemiology Project to identify peripheral arterial disease cases from Olmsted County, MN, for the years 1998 to 2011. The study cohort was composed of 1676 patients: 593 patients died over 5-year follow-up. The c-statistic for survival in the overall data set was 0.76 (95% confidence interval [CI], 0.74-0.78), and the c-statistic across 10 cross-validation data sets was 0.75 (95% CI, 0.73-0.77). Stratification of cases demonstrated increasing mortality risk by subgroup (low: hazard ratio, 0.35 [95% CI, 0.21-0.58]; intermediate-high: hazard ratio, 2.98 [95% CI, 2.37-3.74]; high: hazard ratio, 8.44 [95% CI, 6.66-10.70], all P<0.0001 versus the reference subgroup). An equation for risk calculation was derived from Cox model parameters and β estimates. Big data infrastructure enabled deployment of the real-time risk calculator to the point of care via the EHR . Conclusions This study demonstrates that electronic tools can be deployed to EHR s to create automated real-time risk calculators to predict survival of patients with peripheral arterial disease. Moreover, the prognostic model developed may be translated to patient care as an automated and individualized real-time risk calculator deployed at the point of care.Entities:
Keywords: electronic health record; peripheral artery disease; prognosis
Mesh:
Year: 2018 PMID: 30571601 PMCID: PMC6405562 DOI: 10.1161/JAHA.118.009680
Source DB: PubMed Journal: J Am Heart Assoc ISSN: 2047-9980 Impact factor: 5.501
Figure 1Process for identification of study cohort. PAD indicates peripheral artery disease; REP, Rochester Epidemiology Project.
Baseline Characteristics of Patients With PAD
| Variable | Overall Cohort (n=1676) |
|---|---|
| Age at diagnosis, mean (SD), y | 71.5 (13.2) |
| Female sex, No. (%) | 755 (45) |
| GFR, mean (SD) | 55 (21.1) |
| Current smoker, No. (%) | 429 (26) |
| Prior limb revascularization, No. (%) | 235 (14) |
| PCAs, No. (%) | 364 (22) |
| ABI value, mean (SD) | 0.8 (0.3) |
| Comorbidities, No. (%) | |
| Diabetes mellitus | 704 (42) |
| Chronic pulmonary disease | 834 (50) |
| Renal disease | 447 (27) |
| Prior myocardial infarction | 466 (28) |
| Heart failure | 515 (31) |
| Cerebrovascular disease | 660 (39) |
| Connective tissue or rheumatologic disease | 181 (11) |
| Peptic ulcer | 318 (19) |
| Hemiplegia | 98 (6) |
| Metastatic solid tumor | 100 (6) |
| Other cancer | 648 (39) |
| Dementia | 174 (10) |
| Moderate or severe liver disease | 149 (9) |
| Medications, No. (%) | |
| Antiplatelet agents (aspirin or clopidogrel) | 998 (60) |
| Statin | 746 (45) |
ABI indicates ankle‐brachial index; GFR, glomerular filtration rate; PAD, peripheral artery disease; PCAs, poorly compressible arteries.
Prognostic Model for 5‐Year Mortality
| Variable | β Estimate | HR | 95% CI |
|
|---|---|---|---|---|
| Age | −0.039 | 0.96 | 0.74–1.26 | 0.78 |
| Age2 | 0.076 | 1.08 | 1.04–1.12 | 0.0002 |
| Female sex | −0.165 | 0.85 | 0.72–1.00 | 0.06 |
| Prior limb revascularization | 0.461 | 1.59 | 1.24–2.02 | 0.0002 |
| Poorly compressible arteries | 0.566 | 1.76 | 1.40–2.22 | <0.0001 |
| ABI value (continuous) per 0.1 | −0.074 | 0.93 | 0.89–0.97 | 0.0007 |
| Diabetes mellitus | 0.321 | 1.38 | 1.16–1.64 | 0.0003 |
| Chronic pulmonary disease | 0.332 | 1.39 | 1.18–1.65 | 0.0001 |
| Renal disease | 0.414 | 1.51 | 1.27–1.80 | <0.0001 |
| Heart failure | 0.634 | 1.89 | 1.58–2.24 | <0.0001 |
| Dementia | 0.562 | 1.76 | 1.43–2.16 | <0.0001 |
| Statin therapy | −0.383 | 0.68 | 0.57–0.81 | <0.0001 |
| Unknown ABI value | 0.235 | 1.26 | 0.92–1.73 | 0.14 |
ABI indicates ankle‐brachial index; CI, confidence interval; HR, hazard ratio.
*Age is centered at 40 years (subtract 40 from age). Estimates are then given per 10‐year increase in age.
Risk Groups for 5‐Year Mortality
| Risk Groups | Deaths, No. (No. at Risk) | HR | 95% CI |
|
|---|---|---|---|---|
| Low risk (score ≤−0.17) | 18 (268) | 0.35 | 0.21–0.58 | <0.0001 |
| Low‐intermediate (−0.17 >score <0.70) | 104 (570) | Reference | ||
| Intermediate‐high (0.70 ≤score <1.85) | 257 (570) | 2.98 | 2.37–3.74 | <0.0001 |
| High (score ≥1.85) | 214 (268) | 8.44 | 6.66–10.70 | <0.0001 |
CI indicates confidence interval; HR, hazard ratio.
Figure 2Kaplan–Meier curves stratified by risk subgroup demonstrate increased mortality with time. Curves from cross‐validation sets (dashed lines) follow overall curves (solid lines) consistent with excellent model calibration.
Figure 3Predictiveness curve for the risk model (line) and observed proportion of patients with 5‐year mortality within each decile (circles). The curve shows good calibration and displays risk of death using various percentiles of the risk score distribution.
Figure 4Calibration in 1 cross‐validation build‐and‐test set. The predicted mortality from the model is an adequate representation of the observed mortality. Results of other cross‐validation sets were similar.
Figure 5Architecture diagram for the automated calculator in the big data infrastructure. LDAP indicates Lightweight Directory Access Protocol; PAD, peripheral artery disease; UDP, unified data platform.
Individualized Risk Score and Probability of Survival Calculations: Example 1
| 60‐Year‐Old Man ABI=0.5 on Statin Therapy Comorbidity: Heart Failure | |||
|---|---|---|---|
| Variable | Coded Value | β Estimate | Coded Value Multiplied by β Estimate |
| (Age‐40)/10 | 2 | −0.03909 | −0.07818 |
| ((Age‐40)/10)2 | 4 | 0.07627 | 0.30508 |
| Female sex | 0 | −0.16506 | 0 |
| Prior revascularization | 0 | 0.46146 | 0 |
| PCAs | 0 | 0.56560 | 0 |
| ABI value (per 0.1) | 5 | −0.07367 | −0.36835 |
| Unknown ABI | 0 | 0.23529 | 0 |
| Diabetes mellitus | 0 | 0.32051 | 0 |
| Lung disease | 0 | 0.33151 | 0 |
| Renal disease | 0 | 0.41382 | 0 |
| History of heart failure | 1 | 0.63442 | 0.63442 |
| Dementia | 0 | 0.56241 | 0 |
| Statin use | 1 | −0.38324 | −0.38324 |
| Sum of scores | 0.10973 (low‐intermediate risk) | ||
| Exponential | e0.10973=1.1160 | ||
| Probability of 5‐y survival | 0.8521.1160=0.836 | ||
ABI indicates ankle‐brachial index; PCAs, poorly compressible arteries. Baseline 5‐year survival (intercept)=0.852; predicted probability of 5‐year survival=baseline survival estimate^e ∑xb. See Table 3 for risk stratification cutoffs.
Individualized Risk Score and Probability of Survival Calculations: Example 2
| 80‐Year‐Old Woman With PCAs Comorbidities: Diabetes Mellitus, Heart Failure, and Dementia | |||
|---|---|---|---|
| Variable | Coded value | β Estimate | Coded Value Multiplied by β Estimate |
| (Age‐40)/10 | 4 | −0.03909 | −0.15636 |
| ((Age‐40)/10)2 | 16 | 0.07627 | 1.22032 |
| Female Sex | 1 | −0.16506 | −0.16506 |
| Prior revascularization | 0 | 0.46146 | 0 |
| PCAs | 1 | 0.56560 | 0.56560 |
| ABI value (per 0.1) | 10 | −0.07367 | −0.7367 |
| Unknown ABI | 0 | 0.23529 | 0 |
| Diabetes mellitus | 1 | 0.32051 | 0.32051 |
| Lung disease | 0 | 0.33151 | 0 |
| Renal disease | 0 | 0.41382 | 0 |
| History of heart failure | 1 | 0.63442 | 0.63442 |
| Dementia | 1 | 0.56241 | 0.56241 |
| Statin use | 0 | −0.38324 | 0 |
| Sum of scores | 2.24514 (high risk) | ||
| Exponential | e2.24514=9.441737 | ||
| Probability of 5‐y survival | 0.8521.1160=0.220 | ||
ABI indicates ankle‐brachial index; PCAs, poorly compressible arteries.
Baseline 5‐year survival=0.852; predicted probability of 5‐year survival=baseline survival estimate^e ∑xb. See Table 3 for risk stratification cutoffs.