Literature DB >> 30532962

Fluorescence Enhancement of a Microbial Rhodopsin via Electronic Reprogramming.

María Del Carmen Marín1,2, Damianos Agathangelou3, Yoelvis Orozco-Gonzalez2,4, Alessio Valentini5, Yoshitaka Kato6, Rei Abe-Yoshizumi6,7, Hideki Kandori6,7, Ahreum Choi8, Kwang-Hwan Jung8, Stefan Haacke3, Massimo Olivucci1,2,4.   

Abstract

The engineering of microbial rhodopsins with enhanced fluorescence is of great importance in the expanding field of optogenetics. Here we report the discovery of two mutants (W76S/Y179F and L83Q) of a sensory rhodopsin from the cyanobacterium Anabaena PCC7120 with opposite fluorescence behavior. In fact, while W76S/Y179F displays, with respect to the wild-type protein, a nearly 10-fold increase in red-light emission, the second is not emissive. Thus, the W76S/Y179F, L83Q pair offers an unprecedented opportunity for the investigation of fluorescence enhancement in microbial rhodopsins, which is pursued by combining transient absorption spectroscopy and multiconfigurational quantum chemistry. The results of such an investigation point to an isomerization-blocking electronic effect as the direct cause of instantaneous (subpicosecond) fluorescence enhancement.

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Year:  2018        PMID: 30532962      PMCID: PMC6475468          DOI: 10.1021/jacs.8b09311

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  43 in total

1.  Demonstration of a sensory rhodopsin in eubacteria.

Authors:  Kwang-Hwan Jung; Vishwa D Trivedi; John L Spudich
Journal:  Mol Microbiol       Date:  2003-03       Impact factor: 3.501

2.  Probing the rhodopsin cavity with reduced retinal models at the CASPT2//CASSCF/AMBER level of theory.

Authors:  Nicolas Ferré; Massimo Olivucci
Journal:  J Am Chem Soc       Date:  2003-06-11       Impact factor: 15.419

3.  Anabaena sensory rhodopsin: a photochromic color sensor at 2.0 A.

Authors:  Lutz Vogeley; Oleg A Sineshchekov; Vishwa D Trivedi; Jun Sasaki; John L Spudich; Hartmut Luecke
Journal:  Science       Date:  2004-09-30       Impact factor: 47.728

4.  (Sub)-picosecond spectral evolution of fluorescence in photoactive proteins studied with a synchroscan streak camera system.

Authors:  I H M van Stokkum; B Gobets; T Gensch; F van Mourik; K J Hellingwerf; R van Grondelle; J T M Kennis
Journal:  Photochem Photobiol       Date:  2006 Mar-Apr       Impact factor: 3.421

5.  S1 and S2 excited States of gas-phase Schiff-base retinal chromophores.

Authors:  I B Nielsen; L Lammich; L H Andersen
Journal:  Phys Rev Lett       Date:  2006-01-04       Impact factor: 9.161

6.  Retinal models: comparison of electronic absorption spectra in the gas phase and in methanol solution.

Authors:  Aurora Muñoz-Losa; Ignacio Fdez Galván; Manuel A Aguilar; M Elena Martín
Journal:  J Phys Chem B       Date:  2008-07-01       Impact factor: 2.991

7.  Protein catalysis of the retinal subpicosecond photoisomerization in the primary process of bacteriorhodopsin photosynthesis.

Authors:  L Song; M A El-Sayed; J K Lanyi
Journal:  Science       Date:  1993-08-13       Impact factor: 47.728

8.  Photochromism of Anabaena sensory rhodopsin.

Authors:  Akira Kawanabe; Yuji Furutani; Kwang-Hwan Jung; Hideki Kandori
Journal:  J Am Chem Soc       Date:  2007-06-15       Impact factor: 15.419

9.  Substitution of Pro206 and Ser86 residues in the retinal binding pocket of Anabaena sensory rhodopsin is not sufficient for proton pumping function.

Authors:  Ah Reum Choi; So Young Kim; Sa Ryong Yoon; Kiho Bae; Kwang-Hwan Jung
Journal:  J Microbiol Biotechnol       Date:  2007-01       Impact factor: 2.351

10.  Optogenetics.

Authors:  Karl Deisseroth
Journal:  Nat Methods       Date:  2010-12-20       Impact factor: 28.547

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  12 in total

1.  Two-State, Three-Mode Parametrization of the Force Field of a Retinal Chromophore Model.

Authors:  Emanuele Marsili; Marwa H Farag; Xuchun Yang; Luca De Vico; Massimo Olivucci
Journal:  J Phys Chem A       Date:  2019-02-26       Impact factor: 2.781

2.  a-ARM: Automatic Rhodopsin Modeling with Chromophore Cavity Generation, Ionization State Selection, and External Counterion Placement.

Authors:  Laura Pedraza-González; Luca De Vico; Marı A Del Carmen Marı N; Francesca Fanelli; Massimo Olivucci
Journal:  J Chem Theory Comput       Date:  2019-04-12       Impact factor: 6.006

Review 3.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

4.  Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.

Authors:  Chi-Yun Lin; Matthew G Romei; Irimpan I Mathews; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2022-02-24       Impact factor: 16.383

5.  Multistate Multiconfiguration Quantum Chemical Computation of the Two-Photon Absorption Spectra of Bovine Rhodopsin.

Authors:  Samira Gholami; Laura Pedraza-González; Xuchun Yang; Alexander A Granovsky; Ilya N Ioffe; Massimo Olivucci
Journal:  J Phys Chem Lett       Date:  2019-10-03       Impact factor: 6.475

6.  Web-ARM: A Web-Based Interface for the Automatic Construction of QM/MM Models of Rhodopsins.

Authors:  Laura Pedraza-González; María Del Carmen Marín; Alejandro N Jorge; Tyler D Ruck; Xuchun Yang; Alessio Valentini; Massimo Olivucci; Luca De Vico
Journal:  J Chem Inf Model       Date:  2020-02-10       Impact factor: 4.956

7.  Electrostatic control of photoisomerization pathways in proteins.

Authors:  Matthew G Romei; Chi-Yun Lin; Irimpan I Mathews; Steven G Boxer
Journal:  Science       Date:  2020-01-03       Impact factor: 47.728

Review 8.  Far-Red Absorbing Rhodopsins, Insights From Heterodimeric Rhodopsin-Cyclases.

Authors:  Matthias Broser
Journal:  Front Mol Biosci       Date:  2022-01-21

Review 9.  Evolution of the Automatic Rhodopsin Modeling (ARM) Protocol.

Authors:  Laura Pedraza-González; Luca De Vico; Massimo Olivucci; Leonardo Barneschi; Daniele Padula
Journal:  Top Curr Chem (Cham)       Date:  2022-03-15

10.  Fragment Localized Molecular Orbitals.

Authors:  Tommaso Giovannini; Henrik Koch
Journal:  J Chem Theory Comput       Date:  2022-07-27       Impact factor: 6.578

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