Literature DB >> 30531910

N6-Methyladenosine methyltransferase ZCCHC4 mediates ribosomal RNA methylation.

Honghui Ma1,2,3, Xiaoyun Wang4, Jiabin Cai5, Qing Dai2,3, S Kundhavai Natchiar6, Ruitu Lv1, Kai Chen2,3, Zhike Lu2,3, Hao Chen1, Yujiang Geno Shi1,7, Fei Lan1, Jia Fan5, Bruno P Klaholz6, Tao Pan8, Yang Shi9,10, Chuan He11,12,13.   

Abstract

N6-Methyladenosine (m6A) RNA modification is present in messenger RNAs (mRNA), ribosomal RNAs (rRNA), and spliceosomal RNAs (snRNA) in humans. Although mRNA m6A modifications have been extensively studied and shown to play critical roles in many cellular processes, the identity of m6A methyltransferases for rRNAs and the function of rRNA m6A modifications are unknown. Here we report a new m6A methyltransferase, ZCCHC4, which primarily methylates human 28S rRNA and also interacts with a subset of mRNAs. ZCCHC4 knockout eliminates m6A4220 modification in 28S rRNA, reduces global translation, and inhibits cell proliferation. We also find that ZCCHC4 protein is overexpressed in hepatocellular carcinoma tumors, and ZCCHC4 knockout significantly reduces tumor size in a xenograft mouse model. Our results highlight the functional significance of an rRNA m6A modification in translation and in tumor biology.

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Year:  2018        PMID: 30531910      PMCID: PMC6463480          DOI: 10.1038/s41589-018-0184-3

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  49 in total

1.  Novel Sm-like proteins with long C-terminal tails and associated methyltransferases.

Authors:  Mario Albrecht; Thomas Lengauer
Journal:  FEBS Lett       Date:  2004-07-02       Impact factor: 4.124

2.  Genome engineering using the CRISPR-Cas9 system.

Authors:  F Ann Ran; Patrick D Hsu; Jason Wright; Vineeta Agarwala; David A Scott; Feng Zhang
Journal:  Nat Protoc       Date:  2013-10-24       Impact factor: 13.491

3.  The last rRNA methyltransferase of E. coli revealed: the yhiR gene encodes adenine-N6 methyltransferase specific for modification of A2030 of 23S ribosomal RNA.

Authors:  Anna Y Golovina; Margarita M Dzama; Ilya A Osterman; Petr V Sergiev; Marina V Serebryakova; Alexey A Bogdanov; Olga A Dontsova
Journal:  RNA       Date:  2012-07-30       Impact factor: 4.942

4.  PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.

Authors:  Markus Hafner; Markus Landthaler; Lukas Burger; Mohsen Khorshid; Jean Hausser; Philipp Berninger; Andrea Rothballer; Manuel Ascano; Anna-Carina Jungkamp; Mathias Munschauer; Alexander Ulrich; Greg S Wardle; Scott Dewell; Mihaela Zavolan; Thomas Tuschl
Journal:  J Vis Exp       Date:  2010-07-02       Impact factor: 1.355

5.  Eukaryotic polyribosome profile analysis.

Authors:  Anthony M Esposito; Maria Mateyak; Dongming He; Marcus Lewis; Arjun N Sasikumar; Jenna Hutton; Paul R Copeland; Terri G Kinzy
Journal:  J Vis Exp       Date:  2010-06-15       Impact factor: 1.355

6.  N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO.

Authors:  Guifang Jia; Ye Fu; Xu Zhao; Qing Dai; Guanqun Zheng; Ying Yang; Chengqi Yi; Tomas Lindahl; Tao Pan; Yun-Gui Yang; Chuan He
Journal:  Nat Chem Biol       Date:  2011-10-16       Impact factor: 15.040

7.  Zcchc11-dependent uridylation of microRNA directs cytokine expression.

Authors:  Matthew R Jones; Lee J Quinton; Matthew T Blahna; Joel R Neilson; Suneng Fu; Alexander R Ivanov; Dieter A Wolf; Joseph P Mizgerd
Journal:  Nat Cell Biol       Date:  2009-08-23       Impact factor: 28.824

8.  The 3D rRNA modification maps database: with interactive tools for ribosome analysis.

Authors:  Dorota Piekna-Przybylska; Wayne A Decatur; Maurille J Fournier
Journal:  Nucleic Acids Res       Date:  2007-10-18       Impact factor: 16.971

9.  Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA.

Authors:  Nian Liu; Marc Parisien; Qing Dai; Guanqun Zheng; Chuan He; Tao Pan
Journal:  RNA       Date:  2013-10-18       Impact factor: 4.942

10.  Structural and functional insights into the molecular mechanism of rRNA m6A methyltransferase RlmJ.

Authors:  Avinash S Punekar; Josefine Liljeruhm; Tyson R Shepherd; Anthony C Forster; Maria Selmer
Journal:  Nucleic Acids Res       Date:  2013-08-13       Impact factor: 16.971

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  99 in total

Review 1.  uORF-mediated translational control: recently elucidated mechanisms and implications in cancer.

Authors:  Hung-Hsi Chen; Woan-Yuh Tarn
Journal:  RNA Biol       Date:  2019-06-24       Impact factor: 4.652

Review 2.  Where, When, and How: Context-Dependent Functions of RNA Methylation Writers, Readers, and Erasers.

Authors:  Hailing Shi; Jiangbo Wei; Chuan He
Journal:  Mol Cell       Date:  2019-05-16       Impact factor: 17.970

Review 3.  N6-methyladenosine as a Novel Regulator of Brain Physiology and Diseases.

Authors:  Bing Han; Hong-Hong Yao
Journal:  Curr Med Sci       Date:  2020-07-17

Review 4.  Regulation of Viral Infection by the RNA Modification N6-Methyladenosine.

Authors:  Graham D Williams; Nandan S Gokhale; Stacy M Horner
Journal:  Annu Rev Virol       Date:  2019-07-05       Impact factor: 10.431

Review 5.  The Biogenesis and Precise Control of RNA m6A Methylation.

Authors:  Huilin Huang; Hengyou Weng; Jianjun Chen
Journal:  Trends Genet       Date:  2019-12-04       Impact factor: 11.639

Review 6.  Role of RNA modifications in cancer.

Authors:  Isaia Barbieri; Tony Kouzarides
Journal:  Nat Rev Cancer       Date:  2020-04-16       Impact factor: 60.716

Review 7.  Genome-wide analysis of CCHC-type zinc finger (ZCCHC) proteins in yeast, Arabidopsis, and humans.

Authors:  Uri Aceituno-Valenzuela; Rosa Micol-Ponce; María Rosa Ponce
Journal:  Cell Mol Life Sci       Date:  2020-04-18       Impact factor: 9.261

Review 8.  m6A Modification in Coding and Non-coding RNAs: Roles and Therapeutic Implications in Cancer.

Authors:  Huilin Huang; Hengyou Weng; Jianjun Chen
Journal:  Cancer Cell       Date:  2020-03-16       Impact factor: 31.743

9.  The human mitochondrial 12S rRNA m4C methyltransferase METTL15 is required for mitochondrial function.

Authors:  Hao Chen; Zhennan Shi; Jiaojiao Guo; Kao-Jung Chang; Qianqian Chen; Cong-Hui Yao; Marcia C Haigis; Yang Shi
Journal:  J Biol Chem       Date:  2020-05-05       Impact factor: 5.157

10.  Dynamic methylome of internal mRNA N7-methylguanosine and its regulatory role in translation.

Authors:  Lionel Malbec; Ting Zhang; Yu-Sheng Chen; Ying Zhang; Bao-Fa Sun; Bo-Yang Shi; Yong-Liang Zhao; Ying Yang; Yun-Gui Yang
Journal:  Cell Res       Date:  2019-09-13       Impact factor: 25.617

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