| Literature DB >> 30513672 |
Katarzyna Mac-Marcjanek1, Andrzej Zieleniak2, Monika Zurawska-Klis3, Katarzyna Cypryk4, Lucyna Wozniak5, Marzena Wojcik6.
Abstract
Although compelling evidence indicates that Sirtuin 1 (SIRT1) plays a prominent role in type 2 diabetes, its relationship with gestational diabetes (GDM) remains elusive. This study was aimed at identifying diabetes-related genes and cellular pathways linked to changes of leukocyte SIRT1 expression at the time of GDM diagnosis. For this purpose, 122 GDM patients were screened for leukocyte SIRT1 expression, and two subgroups were distinguished, namely GDM/SIRT1(↑) (n = 30, p < 0.05) and GDM/SIRT1(↔) (n = 92, p > 0.05), with significant and insignificant changes in leukocyte SIRT1 expression compared to a normal glucose tolerant (NGT) group (n = 41), respectively. PCR array analysis identified 11 diabetes-related genes with at least a ± 2-fold difference in expression in GDM/SIRT1(↑) patients (n = 9) vs. NGT controls (n = 7); in addition, significant differences in the expression of four of the six investigated genes were confirmed between the entire GDM/SIRT1(↑) group and the whole NGT group (p < 0.05). Interestingly, of these four genes, only ACLY expression was found to significantly differ between GDM/SIRT1(↑) and GDM/SIRT1(↔). This study demonstrates that under hyperglycemic conditions, leukocyte SIRT1 overexpression is accompanied by an over-abundance of three transcripts and an under-abundance of another; these four govern related metabolism, inflammation, and transport functions, suggesting that such alterations might represent systemic biological adaptations with a unique ACLY under-expression in GDM/SIRT1(↑) women.Entities:
Keywords: Ingenuity Pathway Analysis (IPA); PCR array; Sirtuin 1 (SIRT1); gene expression; gestational diabetes mellitus (GDM)
Mesh:
Substances:
Year: 2018 PMID: 30513672 PMCID: PMC6321739 DOI: 10.3390/ijms19123826
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Clinical and leukocyte SIRT1 mRNA expression data for different experimental groups.
| Variable | NGT | GDM |
| GDM/ | GDM/ |
|
|---|---|---|---|---|---|---|
| Age [years] | 29.0 (26.0–33.0) | 30.5 (27.0–33.0) | 0.156 | 31.0 (27.5–33.0) | 29.5 (26.0–33.0) | 0.265 |
| Pre-pregnancy BMI [kg/m2] | 24.2 (21.4–26.6) | 24.3 (21.1–27.7) | 0.648 | 24.0 (21.1–27.7) | 24.6 (21.9–27.7) | 0.845 |
| Pregnancy BMI [kg/m2] | 28.0 (25.0–30.5) | 27.5 (24.5–32.1) | 0.905 | 27.5 (24.2–32.1) | 28.1 (25.0–32.7) | 0.932 |
| Gestational weight gain [kg] | 10.0 (6.0–12.0) | 8.2 (6.0–12.0) | 0.244 | 8.0 (6.0–11.8) | 8.9 (6.0–13.0) | 0.500 |
| TGs [mg/dL] | 214.5 (179.0–277.1) | 217.9 (175.5–259.0) | 0.477 | 217.9 (174.0–259.0) | 217.8 (175.5–264.0) | 0.772 |
| TC [mg/dL] | 261.3 (238.5–282.5) | 251.1 (226.0–282.3) | 0.303 | 254.0 (226.0–283.0) | 249.7 (219.0–275.0) | 0.570 |
| HDL-C [mg/dL] | 76.3 (60.6–85.5) | 70.5 (59.3–82.5) | 0.810 | 74.0 (61.0–84.0) | 65.0 (53.0–73.0) | 0.279 |
| LDL-C [mg/dL] | 141.5 (123.5–168.5) | 136.0 (114.0–158.0) | 0.547 | 134.5 (114.0–158.0) | 145.0 (133.0–154.0) | 0.571 |
| HbA1c [%] | 5.3 (5.0–5.6) | 5.4 (5.2–5.7) | 0.090 | 5.4 (5.2–5.7) | 5.4 (5.2–5.7) | 0.223 |
| FPG [mg/dL] | 81.0 (74.5–84.0) | 88.0 (80.0–97.0) | 0.000 | 88.0 (79.5–97.5) | 92.0 (80.0–97.0) | 0.000 A,B |
| 1-h OGTT [mg/dL] | 164.5 (126.0–185.0) | 183.0 (168.0–202.0) | 0.000 | 182.0 (168.0–202.0) | 189.0 (160.0–200.0) | 0.000 A,B |
| 2-h OGTT [mg/dL] | 122.0 (102.0–132.0) | 157.0 (148.0–176.0) | 0.000 | 156.0 (147.0–173.5) | 158.0 (152.0–178.0) | 0.000 A,B |
| CRP [mg/L] | 3.9 (2.1–8.3) | 3.3 (2.0–5.9) | 0.308 | 3.4 (2.0–6.3) | 3.1 (2.3–5.8) | 0.591 |
| Insulin [µlU/mL] | 7.1 (1.7–10.1) | 5.2 (2.8–8.5) | 0.602 | 5.2 (2.9–8.8) | 5.2 (2.4–8.5) | 0.790 |
| HOMA-IR | 1.3 (0.5–2.2) | 1.2 (0.6–1.9) | 0.972 | 1.2 (0.6–1.9) | 1.3 (0.6–1.9) | 0.995 |
|
| 0.59 (0.00–1.00) | 0.78 (0.27–1.41) | 0.041 | 0.56 (0.16–0.89) | 1.81 (1.54–2.28) | 0.000 B,C |
Abbreviations: BMI, body mass index; CRP, C reactive protein; FPG, fasting plasma glucose; HDL, high-density lipoprotein; HOMA-IR, homeostasis model assessment of insulin resistance; LDL, low density lipoprotein; TC, total cholesterol; TGs, triglycerides. Data are presented as median and interquartile range (25–75 percentiles). # p values assessed by Wilcoxon’s test; ## p values between NGT, GDM/SIRT1(↔), and GDM/SIRT1(↑) groups assessed by Kruskal-Wallis’ test; p < 0.05 GDM/SIRT1(↔) vs. NGT groups (A), GDM/SIRT1(↑) vs. NGT groups (B), and GDM/SIRT1(↔) vs. GDM/SIRT1(↑) groups (C) as assessed by post hoc pairwise multiple comparisons of mean rank sums.
Spearman correlation analysis of leukocyte SIRT1 gene expression with clinical parameters in the entire study groups.
| Variable | NGT+GDM | NGT+GDM/ | NGT+GDM/ | |||
|---|---|---|---|---|---|---|
|
|
|
| ||||
| Age [years] | −0.03 (−0.18, 0.13) | 0.721 | 0.01 (−0.16, 0.18) | 0.938 | −0.02 (−0.25, 0.22) | 0.888 |
| Pre−pregnancy BMI [kg/m2] | 0.10 (−0.05, 0.25) | 0.197 | 0.12 (−0.06, 0.28) | 0.187 | 0.12 (−0.11, 0.35) | 0.325 |
| Pregnancy BMI [kg/m2] | 0.04 (−0.11, 0.20) | 0.581 | 0.04 (−0.14, 0.21) | 0.679 | 0.07 (−0.17, 0.30) | 0.553 |
| Gestational weight gain [kg] | −0.12 (−0.27, 0.03) | 0.127 | −0.16 (−0.32, 0.02) | 0.069 | −0.12 (−0.34, 0.12) | 0.318 |
| TC [mg/dL] | −0.01 (−0.20, 0.19) | 0.919 | 0.03 (−0.19, 0.24) | 0.815 | −0.02 (−0.29, 0.26) | 0.911 |
| TGs [mg/dL] | 0.06 (−0.14, 0.25) | 0.575 | 0.09 (−0.12, 0.30) | 0.401 | 0.06 (−0.22, 0.33) | 0.695 |
| HDL-C [mg/dL] | −0.17 (−0.36, 0.02) | 0.080 | −0.10 (−0.31, 0.11) | 0.345 | −0.25 (−0.49, 0.03) | 0.082 |
| LDL-C [mg/dL] | −0.00 (−0.20, 0.19) | 0.969 | −0.08 (−0.29, 0.14) | 0.474 | 0.01 (−0.27, 0.29) | 0.942 |
| HbA1c [%] | 0.04 (−0.12, 0.20) | 0.616 | 0.03 (−0.15, 0.20) | 0.774 | 0.31 (0.08, 0.51) | 0.010 * |
| FPG [mg/dL] | 0.07 (−0.09, 0.22) | 0.406 | −0.03 (−0.21, 0.15) | 0.733 | 0.41 (0.19, 0.59) | 0.000 * |
| 1-h OGTT [mg/dL] | −0.00 (−0.17, 0.17) | 0.993 | −0.05 (−0.24, 0.14) | 0.615 | 0.32 (0.06, 0.53) | 0.015 * |
| 2-h OGTT [mg/dL] | 0.23 (0.07, 0.37) | 0.005 * | 0.08 (−0.09, 0.25) | 0.368 | 0.76 (0.64, 0.85) | 0.000 * |
| CRP [mg/L] | −0.01 (−0.18, 0.16) | 0.922 | 0.04 (−0.15, 0.22) | 0.702 | −0.01 (−0.26, 0.24) | 0.924 |
| Insulin [µlU/mL] | −0.13 (−0.29, 0.04) | 0.138 | −0.12 (−0.30, 0.07) | 0.196 | −0.15 (−0.38, 0.10) | 0.233 |
| HOMA-IR | −0.08 (−0.25, 0.10) | 0.386 | −0.11 (−0.30, 0.09) | 0.285 | −0.06 (−0.31, 0.19) | 0.623 |
BMI, body mass index; CRP, C-reactive protein; FPG, fasting blood glucose; HDL, high-density lipoprotein; HOMA-IR, homeostasis model assessment of insulin resistance; LDL, low-density lipoprotein; TC, total cholesterol; TGs, triglycerides. * p < 0.05 as assessed by Spearman’s rank order correlation analysis; 95% confidence interval (CI) for correlation coefficient.
ANCOVA analysis of leukocyte SIRT1 expression between the GDM and NGT groups (Status) with adjustment for age and obesity variables (pre- and pregnancy BMI and gestational weight gain).
| Variable |
|
|
|
|
|---|---|---|---|---|
| Age | 1 | 0.34 | 0.74 | 0.392 |
| Pre-pregnancy BMI | 1 | 0.11 | 0.24 | 0.627 |
| Pregnancy BMI | 1 | 0.15 | 0.32 | 0.574 |
| Gestational weight gain | 1 | 0.29 | 0.62 | 0.431 |
| Status | 1 | 2.17 | 4.72 | 0.031 |
DF, degrees of freedom; F, Fisher’s test; MS, mean square; p < 0.05 for analysis of covariance (ANCOVA) between two groups with adjustment for the corresponding variables.
Figure 1Comparison of leukocyte SIRT1 mRNA expression in the NGT (n = 41), GDM/SIRT1(↑) (n = 30) and GDM/SIRT1(↔) (n = 92) groups. Leukocyte SIRT1 mRNA level was normalized to a mean of the endogenous control GAPDH. Data are expressed as median ± interquartile range (25–75%), * p < 0.05 as assessed by post hoc test for pairwise multiple comparisons of mean rank sums; n.s.: non-significant.
List of 11 diabetes-related genes with at least ± 2-fold regulation in leukocytes from the GDM/SIRT1(↑) pregnancies (n = 9) compared to the NGT controls (n = 7).
| Unigene | GenBank | Symbol | Description | FC | |
|---|---|---|---|---|---|
|
| |||||
| Hs,431279 | NM_006178 |
| 0.48 | ||
| Hs,511149 | NM_003825 |
| Synaptosomal-associated protein, 23 kDa | 3.90 | |
| Hs,515104 | NM_006949 |
| Syntaxin binding protein 2 | 0.50 | |
|
| |||||
| Hs,387567 | NM_001096 |
| ATP citrate lyase | 0.48 | |
| Hs,461047 | NM_000402 |
| Glucose-6-phosphate dehydrogenase | 2.81 | |
| Hs,524418 | NM_005276 |
| Glycerol-3-phosphate dehydrogenase 1 (soluble) | 0.49 | |
|
| |||||
| Hs,654458 | NM_000600 |
| Interleukin 6 (interferon, beta 2) | 2.07 | |
|
| |||||
| Hs,471508 | NM_005544 |
| Insulin receptor substrate 1 | 0.49 | |
| Hs,442344 | NM_003749 |
| Insulin receptor substrate 2 | 2.31 | |
|
| |||||
| Hs,32938 | NM_000209 |
| Pancreatic and duodenal homeobox 1 | 0.33 | |
| Hs,592123 | NM_004176 |
| Sterol regulatory element binding transcription factor 1 | 0.32 | |
* Grouped according to function based on Qiagen listing. The fold changes (FC) are listed for each gene.
Comparison of differences in gene expression between GDM and NGT for each of the six genes, as indicated by PCR array and RT-qPCR verification.
|
|
|
|
| |
|---|---|---|---|---|
|
| ||||
|
| Synaptosomal-associated protein, 23 kDa | 3.90 | 6.55 * | 3.93 |
|
| ||||
|
| ATP citrate lyase | 0.48 | 0.63 * | 1.11 |
|
| Glucose-6-phosphate dehydrogenase | 2.81 | 1.52 * | 1.06 |
|
| ||||
|
| Interleukin 6 (interferon, beta 2) | 2.07 | 2.28 * | 1.88 * |
|
| ||||
|
| Insulin receptor substrate 2 | 2.31 | 2.62 | 1.69 |
|
| ||||
|
| Sterol regulatory element binding transcription factor 1 | 0.32 | 0.33 | 0.68 |
Grouped according to function based on Qiagen listing. * p < 0.05 as assessed by Kruskal-Wallis test followed by post hoc pairwise multiple comparisons. The fold changes (FC) are listed for each gene.
Figure 2Verification results of the genes ACLY (A), G6PD (B), IL6 (C), IRS2 (D), SNAP23 (E), and SREBF1 (F) in NGT (n = 41), GDM/SIRT1(↔) (n = 92), and GDM/SIRT1(↑) (n = 30) groups by RT-qPCR. All mRNA levels of the investigated genes were normalized to a mean of the endogenous control GAPDH. Data are expressed as median ± interquartile range (25–75%); * p < 0.05, as assessed by post hoc test for pairwise multiple comparisons of mean rank sums; n.s.: non-significant.
Biological function associated with GDM/SIRT1(↑) identified based on Ingenuity Pathway Analysis (IPA).
| Category | Top Function | Number of Targets | |
|---|---|---|---|
|
| |||
| 1 | Inflammatory response | 6.60 × 10−6–3.24 × 10−2 | 3 |
| 2 | Cardiovascular disease | 2.54 × 10−5–4.55 × 10−2 | 3 |
| 3 | Organismal injury and abnormalities | 2.54 × 10−5–4.87 × 10−2 | 4 |
| 4 | Immunological disease | 9.57 × 10−5–2.33 × 10−2 | 2 |
| 5 | Inflammatory disease | 9.57 × 10−5−1.53 × 10−2 | 2 |
|
| |||
| 1 | Cell-to cell signaling and interaction | 6.60 × 10−6–3.15 × 10−2 | 2 |
| 2 | Cellular development | 2.10 × 10−5–4.70 × 10−2 | 4 |
| 3 | Drug metabolism | 3.82 × 10−5–1.41 × 10−2 | 2 |
| 4 | Molecular transport | 3.82 × 10−5–3.04 × 10−2 | 5 |
| 5 | Small molecule biochemistry | 3.82 × 10−5–3.04 × 10−2 | 4 |
|
| |||
| 1 | Hematological system development and function | 6.60 × 10−6–4.82 × 10−2 | 4 |
| 2 | Immune cell trafficking | 6.60 × 10−6–3.24 × 10−2 | 2 |
| 3 | Cardiovascular system development and function | 2.54 × 10−5–4.44 × 10−2 | 3 |
| 4 | Organ morphology | 2.54 × 10−5–4.44 × 10−2 | 3 |
| 5 | Organismal development | 2.54 × 10−5–4.23 × 10−2 | 3 |
This selection is organized by the negative logarithm of p-values (Fisher test), calculated by IPA ([-Log (0.05) = 1.3]). The p-value range indicates the p-values of the various pathways and processes belonging to that category. The number of targets indicates the total number of genes associated with the functional category.
List of top five most significant canonical pathways.
| Pathways |
|
|---|---|
| Sirtuin signaling pathway | 4.20 × 10−5 |
| Acetyl-CoA biosynthesis III (from citrate) | 3.01 × 10−4 |
| Pentose phosphate pathway (oxidative branch) | 1.20 × 10−3 |
| Pentose phosphate pathway | 3.01 × 10−3 |
| Differential regulation of cytokine production in macrophage and T helper cells by IL-17A and IL-17F | 5.41 × 10−3 |
Figure 3Cell-to cell signaling and interaction, hematological system development and function, inflammatory response network in the GDM/SIRT1(↑) patients, as identified by IPA. The five genes (SIRT1, ACLY, G6PD, IL6, and SNAP23) verified as significant in the entire GDM/SIRT1(↑) group (p < 0.05) were converted into a gene network by IPA software. The figure displays the network graphically as nodes (gene/gene product) and edges (biological relationship between nodes). The up-regulated genes are shown in gray shading, with the color intensity indicating the fold change in expression, whereas the down-regulated gene (ACLY) is shown in black. A direct relationship is presented as a straight line, and an indirect relationship as a dotted line. Genes involved in the network that are not included in the transcriptome results are shown in white. The node shapes are indicative of function, with the legend given to the right.
Primer sequences used for PCR reactions.
| Gene Symbol | Primer Sequence 5’→3’ | Amplicon Size (bp) |
|---|---|---|
|
| ||
|
| F: TCACCACCAGATTCTTCAGTG | 544 |
|
| F: CTGCACCACCAACTGCTTAG | 514 |
|
| ||
|
| F: TCTTTGTGCTGGGAAGGAGT | 90 |
|
| F: ACGTCCGTGATGAGAAGGTC | 133 |
|
| F: CCTGAGAAAGGAGACATGTAACAAG | 79 |
|
| F: CGGTGAGTTCTACGGGTACAT | 194 |
|
| F: TAGCCATTGAGTCTCAGGATG | 72 |
|
| F: ACAGTGACTTCCCTGGCCTAT | 222 |
|
| F: GGTGGTCTCCTCTGACTTCAACA | 27 |
F, forward; R, reverse.