| Literature DB >> 30510992 |
Takashi Kijima1, Hiroshi Nakagawa2, Masataka Shimonosono3, Prasanna M Chandramouleeswaran4, Takeo Hara5, Varun Sahu6, Yuta Kasagi7, Osamu Kikuchi8, Koji Tanaka9, Veronique Giroux4, Amanda B Muir7, Kelly A Whelan10, Shinya Ohashi11, Seiji Naganuma12, Andres J Klein-Szanto13, Yoshiaki Shinden14, Ken Sasaki14, Itaru Omoto14, Yoshiaki Kita14, Manabu Muto11, Adam J Bass15, J Alan Diehl16, Gregory G Ginsberg4, Yuichiro Doki5, Masaki Mori5, Yasuto Uchikado14, Takaaki Arigami14, Narayan G Avadhani17, Devraj Basu6, Anil K Rustgi18, Shoji Natsugoe19.
Abstract
Background & Aims: Oropharyngeal and esophageal squamous cell carcinomas, especially the latter, are a lethal disease, featuring intratumoral cancer cell heterogeneity and therapy resistance. To facilitate cancer therapy in personalized medicine, three-dimensional (3D) organoids may be useful for functional characterization of cancer cells ex vivo. We investigated the feasibility and the utility of patient-derived 3D organoids of esophageal and oropharyngeal squamous cell carcinomas.Entities:
Keywords: 3D Organoids; 3D, 3-dimensional; 5-Fluorouracil; 5FU, 5-fluorouracil; AV, autophagy vesicle; Autophagy; CD44; CD44H, high expression of CD44; CQ, chloroquine; DMEM, Dulbecco’s modified Eagle medium; EMT, epithelial-mesenchymal transition; ESCC, esophageal squamous cell carcinoma; FBS, fetal bovine serum; H&E, hematoxylin and eosin; IC50, half maximal inhibitory concentration; IHC, immunohistochemistry; LC3, light chain 3; OPSCC, oropharyngeal squamous cell carcinoma; PI, propidium iodide; SCCs, squamous cell carcinomas; TE11R, 5-fluorouracil–resistant derivative of TE11
Mesh:
Substances:
Year: 2018 PMID: 30510992 PMCID: PMC6260338 DOI: 10.1016/j.jcmgh.2018.09.003
Source DB: PubMed Journal: Cell Mol Gastroenterol Hepatol ISSN: 2352-345X
Patients Subjected to Biopsy Before Surgery
| Patient | Type | Stage | Grade | 3D Organoids | Neoadjuvant Therapy | Surgical Resection | |||
|---|---|---|---|---|---|---|---|---|---|
| Normal | Tumor | Type | Clinical response | Histological response | |||||
| 1 | ESCC | III | mod | - | + | CT | PD | n/a | - |
| 4 | ESCC | IV | poor | + | + | CT | PD | 1 | + |
| 5 | ESCC | III | well | + | + | CRT | SD | n/a | - |
| 6 | ESCC | III | well | - | - | CRT | SD | 1 | + |
| 8 | ESCC | III | mod | + | + | CRT | SD | n/a | - |
| 9 | ESCC | III | mod | + | - | CRT | PR | 3 | + |
| 10 | ESCC | III | poor | + | + | CT | PD | n/a | - |
| 12 | ESCC | III | mod | + | + | CRT | SD | n/a | - |
| 13 | ESCC | III | poor | - | - | CRT | PR | 3 | + |
| 14 | ESCC | III | mod | - | - | CRT | PR | 3 | + |
| 15 | ESCC | IV | well | + | + | CRT | SD | 1 | + |
| 16 | ESCC | III | mod | + | + | CT | SD | 1 | + |
| 17 | ESCC | III | poor | + | - | CRT | PR | n/a | - |
| 18 | ESCC | III | mod | + | + | CRT | PR | 1 | + |
| 19 | ESCC | III | well | + | + | CRT | PR | 1 | + |
| 20 | ESCC | IV | poor | + | + | CRT | PD | n/a | - |
| 23 | OPSCC | IV | mod | n.d. | + | n.d. | n/a | n/a | + |
| 24 | OPSCC | IV | mod | n.d. | + | n.d. | n/a | n/a | + |
| 25 | OPSCC | IV | poor | n.d. | + | n.d. | n/a | n/a | + |
| 26 | OPSCC | III | poor | n.d. | + | n.d. | n/a | n/a | + |
| 27 | OPSCC | III | mod | n.d. | - | n.d. | n/a | n/a | + |
NOTE. The formation of 3D organoids was evaluated every other day and determined at day 14. The failure of 3D organoid formation was confirmed at day 21 following an extended observation period. Four patients (2, 3, 7, 11) were excluded for analyses due to microbial (fungal) contamination of tumor organoid culture. Two patients (21, 22) were used for flow cytometry only (Figure 5). We excluded these 2 patients in this table. Two patients underwent surgery in stage IV. Patient 4 underwent esophagectomy following chemotherapy that decreased the size of metastatic liver tumor; however, clinical response was assessed as PD for multiple metastatic liver lesions newly identified during the esophagectomy. Patient 15 was eligible for surgery for distant lymph node metastasis based on a guideline by the Japanese classification of Esophageal Cancer, 11th edition.
CRT, chemoradiation therapy; CT, chemotherapy; mod, moderately differentiated; n/a, not available; n.d., not determined (3D organoids) or not done (neoadjuvant therapy); PD, progressive disease; poor, poorly differentiated; PR, partial response; SD, stable disease; well, well-differentiated.
Neoadjuvant therapy was performed before surgery.
No surgery performed.
Figure 13D organoids generation and analyses. Biopsies from tumors and adjacent normal mucosa were taken at the time of diagnostic endoscopy and enzymatically dissociated and filtrated to prepare single-cell suspensions in Matrigel to initiate 3D organoid culture. The resulting 3D products were subjected to morphological and functional assays at P0 and subsequent passages (P1 or later) with or without pharmacological treatments (eg, 5FU). Scale bar = 100 μm.
Figure 2Growth kinetics of patient-derived 3D organoids. 3D organoids grown from normal mucosa and tumors were photomicrographed under phase-contrast microscopy. (A) Representative images of primary 3D organoids at day 13 from paired normal mucosa and tumor biopsies. The average size (mean ± SD) of primary 3D organoids (P0) from 3 independent patients (biological replicates) were plotted at indicated time points as in the growth curve (right). ns, not significant vs normal mucosa. (B) The representative images of passaged tumor-derived 3D organoids (passage 4 [P4]) are shown (left) along with the corresponding growth curve (right). The growth curve demonstrates the average size (mean ± SD) of ESCC 3D organoids from 2 independent patients (biological replicates). *P < .05 vs all earlier indicated time points. Scale bar = 100 μm. All data were presented as mean ± SD. Student’s t test was used to examine statistical significance.
3D Organoids Formation Frequency per Organoid Size From ESCC Patients
| Patient | Normal Mucosa-Derived 3D Organoids | Tumor-Derived 3D Organoids | ||||
|---|---|---|---|---|---|---|
| 50–100 μm | 100–200 μm | ≥200 μm | 50–100 μm | 100–200 μm | ≥200 μm | |
| 1 | 0 | 0 | 0 | 22 ± 11 | 4 ± 1.3 | 0 |
| 4 | 43 ± 6.7 | 25 ± 5.0 | 8 ± 2.6 | 70 ± 12 | 26 ± 6.5 | 7 ± 3.2 |
| 5 | 9 ± 1.3 | 0.8 ± 0.4 | 0 | 78 ± 12 | 39 ± 7.5 | 0 |
| 8 | 56 ± 12 | 15 ± 4.0 | 0 | 22 ± 3.2 | 9 ± 2.4 | 0 |
| 9 | 52 ± 1.5 | 28 ± 1.7 | 0 | 0 | 0 | 0 |
| 10 | 27 | 11 | 0 | 31 ± 3.2 | 33 ± 5.4 | 2.1 ± 0.7 |
| 12 | 25 ± 6.1 | 13 ± 4.0 | 0 | 105 ± 7.8 | 58 ± 3.3 | 0.3 ± 0.2 |
| 15 | n.d. | n.d. | n.d. | 93 ± 20 | 4 ± 1.8 | 0 |
| 16 | n.d. | n.d. | n.d. | 113 ± 8.7 | 16 ± 2.8 | 1.1 ± 0.4 |
| 17 | >200 | 237 ± 56 | 4 ± 0.3 | 0 | 0 | 0 |
| 18 | 120 ± 5.3 | 74 ± 3.8 | 3 ± 0.7 | 83 ± 6.4 | 56 ± 4.5 | 21 ± 1.9 |
| 19 | >200 | 92 ± 4.3 | 8 ± 1.2 | 84 ± 17 | 55 ± 9.2 | 22 ± 4.5 |
| 20 | >200 | 107 ± 5.4 | 4 ± 0.8 | >200 | 27 ± 4.2 | 0.2 ± 0.1 |
NOTE. Values are mean ± SD. The 3D organoid formation rate from ESCC patients was determined at day 14 as the average number of organoids formed from 2 × 104 cells seeded per well. 3–10 independent wells were used except patient 10.
n.d., not determined (due to a small number of viable cells isolated from a biopsy).
Single well only for 3D organoids from normal mucosa.
Figure 5Tumor biopsies and TE11 3D organoids contain CD44H SCC cells with high autophagic activities. Intratumoral heterogeneity was evaluated by flow cytometry for cell surface markers and autophagic activities. Biopsies from tumors and adjacent normal mucosa from 2 ESCC and 2 OPSCC patients were dissociated for flow cytometry to detect CD44H cells and AV content (Cyto-ID). (A) The representative histograms of patient 21. (B) All 4 patients (biological replicates) showed an increased CD44H cell content in tumors compared with normal mucosa (*P < .05, vs normal, n = 3 by Student’s t test) and an increased AV content in CD44H cells as compared with CD44L cells (*P < .05, vs CD44L, n = 3 by Student’s t test) within tumor biopsies. (C) The cell surface expression pattern of CD44 of TE11 ESCC cells was analyzed in xenograft tumors and 3D organoids. The AV content (Cyto-ID) in CD44H cells was compared with the bulk population of TE11 cells in xenograft tumors and 3D organoids. Representative histogram plots (left) are shown with the corresponding quantification (right) from 3 independent experiments with similar results (*P < .05 vs bulk, n = 3 by Student’s t test). All data are presented as mean ± SD.
Figure 3Morphological analysis of patient-derived 3D organoids. Biopsies and 3D organoids representing (A) normal mucosa and (B–E) tumors from indicated patients were morphologically analyzed by H&E staining, IHC for p53, Ki-67, and cleaved LC3. (A) Normal mucosa gave rise to non-neoplastic 3D organoids with a clear concentric stratification or stratified squamous cell differentiation gradient, approximately reproducing all layers of a stratified squamous epithelium with basaloid and spinous cells in the periphery and stratum corneum-like squames in the center. Tumor biopsies gave rise to both (B) neoplastic and (C) non-neoplastic 3D structures. (B) Tumor-derived neoplastic 3D structures (SCC 3D organoids) feature lack clear differentiation pattern although the eosinophilic cytoplasm of most cells point to a squamous differentiation, and thus, compatible with poorly differentiated squamous cell carcinoma. There is mild to moderate nuclear atypia noted. (C) Tumor-derived non-neoplastic 3D organoids contain cells with very little or no nuclear atypia (patient 12). The majority of non-neoplastic structures feature focal incomplete keratinization without clear stratification (patient 5). The minority of non-neoplastic structures display stratification (ie, a concentric complete keratinization [patient 4]), a rare cystic form with squamous differentiation with very little or no terminally differentiated squamous (horny layer-like) cells. Scale bar = 100 μm for tissue sections; (A, C) 20 μm for 3D organoids. Scale bar = 100 μm for tissue sections (patient 4); 20 μm for 3D organoids (patient 4); and (B) 50 μm for 3D organoids (patients 10 and 16). (D) Ki67 labeling index was determined in tumor-derived neoplastic (SCC compatible) and non-neoplastic 3D structures (10 per each group) from multiple patients as biological replicates (3 independent patients for neoplastic 3D organoids and 7 independent patients for non-neoplastic 3D organoids). Data were presented as mean ± SD. Student’s t test was used to examine statistical significance. *P < .05, vs non-neoplastic organoids. (E) Cleaved LC3 was stained in tumor biopsies and corresponding SCC 3D organoids. Scale bar = 100 μm for tissue sections; and 50 μm for 3D organoids.
Frequency of Organoid Types Within Patient Tumor-Derived 3D Organoids
| Patient | Tumor-Derived 3D Organoids Content | |
|---|---|---|
| Non-Neoplastic (%) | Neoplastic (SCC-Compatible) (%) | |
| 1 | n.d. | n.d. |
| 4 | 28 | 72 |
| 5 | 100 | 0 |
| 8 | 95 | 5 |
| 10 | 86 | 14 |
| 12 | 100 | 0 |
| 15 | n.d. | n.d. |
| 16 | 67 | 33 |
| 18 | 100 | 0 |
| 19 | 92 | 8 |
| 20 | 87 | 13 |
| 23 | 25 | 75 |
| 24 | 67 | 33 |
| 26 | 11 | 89 |
NOTE. The primary 3D organoids (P0) generated directly from ESCC and OPSCC patient biopsies were evaluated by H&E staining for the frequency of 3D structures with non-neoplastic and neoplastic characteristics. Each organoid type was determined by evaluating 15–119 spherical structures (>50 μm) for each patient except patient 16 where only 3 3D organoid structures were detected throughout all H&E slides examined. None of the 3D organoids from normal mucosa contained neoplastic organoids.
n.d., not determined.
Figure 4Morphological characteristics and functional analysis of cell line–derived ESCC 3D organoids. ESCC 3D organoids were grown with TE11 cells in indicated cell culture media to acquire (A) phase contrast images and evaluate (B) organoid growth (size) at indicated time points. (C) Organoid formation rate was determined at day 11. RPMI1640 and DMEM are supplemented with 10% FBS. aDMEM/F12+ is fully supplemented as used to grow patient-derived 3D organoids. Scale bar =100 μm. (B) Data are presented as mean ± SD of at least 7 organoids. Data represent 3 independent experiments with similar results and 1-way analysis of variance with multiple comparisons (Tukey) was performed for each (B) time point in and (C) condition. *P < .05 vs RPMI1640, n = 3. (D) 3D organoids were grown with indicated ESCC cell lines in RPMI-10% FBS for morphological analyses by H&E staining. All tested cell lines give rise to solid 3D organoids comprising atypical cells with high nuclear/cytoplasmic ratio. Organoids from TE4, TE9 and TE10 show more basophilic cells with moderate to severe atypia. TE11 organoids show more eosinophilic cytoplasm and little nuclear atypia. TE8 and TE5 organoids represent intermediate variants with moderate atypia and eosinophilic cytoplasm. Scale bar = 100 μm.
Tumor Organoids Formation and Response to Chemotherapy or Chemoradiation Therapy in ESCC Patients
| Tumor-Derived 3D Organoids formation | Therapeutic Response | ||
|---|---|---|---|
| PD+SD (n = 10) | PR (n = 6) | ||
| Success (n = 11) | 9 | 2 | .0357 |
| Failure (n = 5) | 1 | 4 | |
NOTE. There was no patient with complete response. Although oncologists typically classify SD as a clinical response, stable disease (SD), either alone or combination with partial response (PR), was not associated with successful organoid formation. Fisher's exact test was used to examine statistical significance.
PD, progressive disease.
Tumor Organoids Formation and Histological Response to Chemotherapy or Chemoradiation Therapy in ESCC Patients
| Tumor-Derived 3D organoids formation | Histological Response | ||
|---|---|---|---|
| Grade 1 (n = 6) | Grade 2 or 3 (n = 3) | ||
| Success (n = 5) | 5 | 0 | .0476 |
| Failure (n = 4) | 1 | 3 | |
NOTE. There was no patient with Grade 0 after chemotherapy or chemoradiation therapy. Fisher's exact test was used to examine statistical significance.
Figure 6Evaluation of 5FU treatment and the relationship between CD44H cells and autophagy in TE11 3D organoids. TE11 and TE11R cells were analyzed for 5FU sensitivity. (A) WST1 assays were performed to determine 5FU IC50. 3D organoids were grown with TE11 and TE11R cells for 8 days. The established 3D organoids and subconfluent monolayer culture (control) were treated with indicated concentrations of 5FU for 72 hours. Representative dose response curves for TE11 and TE11R under indicated conditions are shown (left) along with the IC50 and R2 values in the table (right). Cell morphology was assessed (B) under a phase-contrast microscopy and (C) by H&E staining. (B) Note that TE11 organoids treated with 5FU displayed disorganized structure (right). Scale bar = (B) 100 μm, (C) 50 μm. (A–C) Data represent 2 independent experiments with similar results with 3 samples per condition in each experiment. TE11 and TE11R were analyzed for (D) CD44H cell content and (E) organoid formation capability. (D) Flow cytometry was used to evaluate cell surface CD44 expression in monolayer culture. Representative histogram plots (top) and quantification (bottom) of CD44 expression are shown. (E) Organoid formation rate was compared by seeding an equal number of TE11 and TE11R cells. (D, E) Data represent 2 independent experiments with similar results with 3 samples per condition in each experiment. (D, E) *P < .05 vs TE11; n = 3 by Student’s t test. (F) CD44H cell content, (G) autophagy activity (Cyto-ID), and (H) cell viability (4',6-diamidino-2-phenylindole) were evaluated by flow cytometry in established 3D organoids following treatment for 72 hours with or without 5FU at a sublethal concentration (100 μM) along with or without 1 μg/mL CQ, a pharmacological inhibitor of autophagic flux. (G) Representative histogram plots (left) are shown with the corresponding quantification (right). All data are presented as mean ± SD. *P < .05 vs 5FU (-) CQ (-); #P < .05 vs 5FU (+) CQ (-). ns, not significant; n = 2 to 3 by 1-way analysis of variance with multiple comparisons (Tukey). (F–H) Data represent 2 independent experiments with similar results.
Figure 7Evaluation of 5FU-induced cytotoxicity, CD44H cells and autophagy in patient tumor-derived 3D organoids. OPSCC patient tumor-derived 3D organoids were treated with indicated concentrations of 5FU for 72 hours. WST1 assays were performed to determine 5FU IC50. (A) Representative dose response curves for primary (P0) and secondary (P1) 3D organoids from patient 23 (left) are shown along with the IC50 and R square values in the table for 3 independent patients as biological replicates (right). Cell morphology was assessed (B) under phase-contrast microscopy and (C) by H&E staining. Scale bar = 100 μm. (D, E) Tumor-derived 3D organoids from 3 independent patients were grown for 7 days followed by treatment with indicated concentrations of 5FU for 72 hours. (D) CD44H cell content and (E) AV content (Cyto-ID) were evaluated by flow cytometry. The representative histograms of patient 23 (left) are shown with the corresponding quantification (right); data of patients 23, 24, and 26 (3 biological replicates) are presented as mean ± SD. (D, E) One-way analysis of variance with multiple comparisons (Tukey) was used to examine statistical significance. *P < .05 vs 0 μM (n = 3) in each patient. not significant (ns) vs 0 μM (n = 3) in each patient. #No technical replicate was available due to the small number of viable cells that were recovered from 3D organoids in patient 24.
Characteristics of the Patient Tumor Biopsy–Derived SCC 3D Organoids in this Study
| Unique Features/Advantages | Technical Limitations/Unknown Factors |
|---|---|
Endoscopic biopsies as starting materials (∼5 × 105 live cells/biopsy) Need of small number of cells 2 × 104 cells/well in 24-well plates 0.2–4 × 103 cells/well in 96-well plates Single cell-derived spherical structure Rapid growth (10–14 days) >70% overall success May predict patient therapy response Passaged to evaluate self-renewing cell populations (eg, CD44H cells) Recapitulation of key genetic, morphological and functional characteristics of the original tumors (eg, p53 mutations, autophagy) Serve as a platform for a variety of assays (eg, IHC, flow cytometry, colorimetric proliferation assays) Pharmacological treatments IC50 determination for drugs Translatable in personalized medicine | Cell viability Fungal contamination from original tissues (biopsies) Influence of coexisting nonepithelial cells (eg, immune cells, fibroblasts) Medium/cell culture conditions may not support SCC 3D organoid growth from all patients Medium/cell culture conditions are not specific for SCC cells and permissive for concurrent growth of non-neoplastic 3D organoids Lack of 3D organoids compatible with well-differentiated SCCs Potential enrichment of cell populations with growth advantage and drug resistance IC50 for drugs may be underestimated by coexisting non-neoplastic 3D organoids, especially in tumor-derived primary 3D organoids Long-term cryopreservation Transportation (long distance) |