| Literature DB >> 30469430 |
Young-Kook Kim1, Juhyun Song2.
Abstract
Long noncoding RNAs (lncRNAs) are involved in diverse physiological and pathological processes by modulating gene expression. They have been found to be dysregulated in the brain and cerebrospinal fluid of patients with neurodegenerative diseases, and are considered promising therapeutic targets for treatment. Among the various neurodegenerative diseases, diabetic Alzheimer's disease (AD) has been recently emerging as an important issue due to several unexpected reports suggesting that metabolic issues in the brain, such as insulin resistance and glucose dysregulation, could be important risk factors for AD. To facilitate understanding of the role of lncRNAs in this field, here we review recent studies on lncRNAs in AD and diabetes, and summarize them with different categories associated with the pathogenesis of the diseases including neurogenesis, synaptic dysfunction, amyloid beta accumulation, neuroinflammation, insulin resistance, and glucose dysregulation. It is essential to understand the role of lncRNAs in the pathogenesis of diabetic AD from various perspectives for therapeutic utilization of lncRNAs in the near future.Entities:
Keywords: LncRNAs; diabetic Alzheimer’s disease; inflammation; insulin resistance; long noncoding RNAs; synaptic dysfunction
Year: 2018 PMID: 30469430 PMCID: PMC6262561 DOI: 10.3390/jcm7110461
Source DB: PubMed Journal: J Clin Med ISSN: 2077-0383 Impact factor: 4.241
Figure 1The classification of noncoding RNAs (ncRNAs) and the number of papers published on the study of ncRNAs in Alzheimer’s disease (AD) and diabetes. (A) The number of ncRNAs identified in humans. The classification of ncRNAs is based on GENCODE (Version 26, October 2016) [92]. The number of ncRNAs in each group is indicated in parentheses. (B) The number of research papers on long ncRNAs (lncRNAs) and microRNAs (miRNAs) in AD and diabetes published in the past 10 years is shown. The papers were located in PubMed and review papers were excluded. Note that although the number of lncRNAs, including long intergenic ncRNAs (lincRNAs), antisense RNAs, and sense intronic RNAs, is larger than that of regulatory small RNAs, only a few papers have been published on lncRNAs in AD and diabetes compared to those published on miRNAs. EST: expressed sequence tag, snRNA: small nuclear RNA, snoRNA: small nucleolar RNA.
List of lncRNAs related to neurogenesis and synaptic function, Aβ accumulation, immune response, insulin signaling and glucose homeostasis. Only those with known mechanisms were selected. The genomic loci of lncRNAs are shown based on the genomic coordinates at hg19 genome assembly for humans or at mm10 assembly for mice, respectively.
| LncRNA | Genomic Locus (hg19 or mm10) | Function | Mechanism | Reference |
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| antisense Uchl1 | chr5:66626495–66676497 (mouse) | Possibly involved in brain function and neurodegenerative diseases through the regulation of Uchl1 | Antisense Uchl1 RNA is required for the association of the overlapping Uchl1 mRNA to activate polysomes for translation | [ |
| Dali | chr1:42750712–42752886 (mouse) | Regulates neural differentiation | Interacts with the DNMT1 DNA methyltransferase in mouse and human and regulates DNA methylation status of CpG island-associated promoters in | [ |
| Evf2 | chr6:6820543–6871592 (mouse) | Evf2 mouse mutants had fewer GABAergic interneurons in the early postnatal hippocampus and dentate gyrus | Recruited DLX and MECP2 transcription factors to important DNA regulatory elements in the Dlx5/6 intergenic region and controlled Dlx5, Dlx6 and Gad1 expression | [ |
| MALAT1 | chr19:5795690–5802671 (mouse) | Regulates synaptic density | Modulates the recruitment of serine/arginine-rich (SR) family pre-mRNA-splicing factors to the transcription site | [ |
| Miat | chr5:112213228–112228948 (mouse) | Involved in neurogenic commitment | Manipulation of Miat triggers pleiotropic effects on brain development and aberrant splicing of Wnt7b | [ |
| Pnky | chr4:22490548–22493126 (mouse) | Regulates neurogenesis from embryonic and postnatal neural stem cell populations | Pnky interacts with the splicing regulator PTBP1 | [ |
| PVT1 | chr15:62037986–62250976 (mouse) | Decreased by autophagic inhibition in diabetes | PVT1-mediated autophagy may protect hippocampal neurons from impairment of synaptic plasticity and apoptosis, and ameliorate cognitive impairment in diabetes | [ |
| RMST | chr12:97858799–97927544 (human) | Regulation of neural stem cell fate | RMST is required for the binding of SOX2 to promoter regions of neurogenic transcription factors | [ |
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| 17A | chr9:101258962–101259132 (human) | Enhances the secretion of Aβ and the Aβx-42/Aβx-40 peptide ratio | Induces the synthesis of an alternative splicing isoform that abolishes GABA B2 intracellular signaling | [ |
| 51A | chr11:121323765–121324036 (human) | Associated with impaired processing of amyloid precursor protein leading to increased Aβ formation | Drives a splicing shift of SORL1 and decreased the synthesis of SORL1 variant | [ |
| BACE1-AS | chr11:117162062–117162886 (human) | Downregulation attenuates the ability of BACE1 to cleave APP and delays the induction of senile plaque formation | BACE1-AS forms RNA duplexes and increases the stability of BACE1 mRNA. | [ |
| BACE1-AS | chr11:117162062–117162886 (human) | Partly complements BACE1 mRNA and enhances BACE1 expression | Associated with HuD | [ |
| BACE1-AS | chr11:117162062–117162886 (human) | Directly implicated in the increased abundance of Aβ1-42 in Alzheimer’s disease | Elevated BACE1-AS increases BACE1 mRNA stability and generates additional Aβ1-42 | [ |
| BC1 | chr7:144,914,470–144,914,623 (mouse) | Involved in Aβ aggregation and protection against spatial learning and memory deficits | Induces APP mRNA translation via association with a fragile X syndrome protein (FMRP) | [ |
| NDM29 | chr11:8,960,365–8,960,710 (human) | In patients affected by neurodegenerative diseases, synthesis of NDM29 is increased | NDM29-dependent cell maturation induces APP synthesis, leading to the increase of Aβ secretion and the concomitant increment of Aβx-42/Aβx-40 ratio | [ |
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| H19 | chr11:2016406–2019105 (human) | Promotes neuroinflammation | Drives HDAC1-dependent M1 microglial polarization | [ |
| Lethe | chr4:132219893–132220589 (mouse) | Regulates inflammatory signaling | Interacts with NF-κB subunit RelA to inhibit RelA DNA binding and target gene activation | [ |
| lincRNA-Cox2 | chr1:150159043–150164948 (mouse) | Mediates both the activation and repression of distinct classes of immune genes | Transcriptional repression of target genes is dependent on interactions of lincRNA-Cox2 with heterogeneous nuclear ribonucleoprotein A/B and A2/B1 | [ |
| MALAT1 | chr11:65265209–65273987 (human) | Regulates glucose-induced up-regulation of inflammatory mediators IL-6 and TNF-α | Through activation of SAA3 expression | [ |
| NEAT1 | chr11:65190269–65213011 (human) | Facilitates the expression of antiviral genes including cytokines such as interleukin-8, and plays an important role in the innate immune response | NEAT1 induction relocates SFPQ from the IL8 promoter to the paraspeckles, leading to transcriptional activation of IL8 | [ |
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| GM10768 | chr19:43838803–43840845 (mouse) | Overexpression of Gm10768 activates hepatic gluconeogenesis while knockdown of Gm10768 improves glucose tolerance and hyperglycemia | Gm10768 sequestrates miR-214 to relieve its suppression on ATF4, a positive regulator of hepatic gluconeogenesis | [ |
| H19 | chr11:2016406–2019105 (human) | H19 depletion results in impaired insulin signaling and decreased glucose uptake | PI3K/AKT-dependent phosphorylation of KSRP promotes biogenesis of let-7 miRNA, and let-7 in turn, downregulates H19 | [ |
| H19 | chr7:142575530–142578146 (mouse) | Regulates the expression of gluconeogenic genes and hepatic glucose output | H19 depletion impaired insulin signaling and increased nuclear localization of FoxO1 | [ |
| MALAT1 | chr11:65265209–65273987 (human) | Promotes hepatic steatosis and insulin resistance | Interacted with SREBP-1c to stabilize nuclear SREBP-1c protein | [ |
| MEG3 | chr12:109540996–109571729 (mouse) | MEG3 suppresses insulin-stimulated glycogen synthesis in primary hepatocytes | MEG3 overexpression increases FoxO1, G6pc, Pepck mRNA expressions and hepatic gluconeogenesis | [ |
| PCGEM1 | chr2:193614571–193641625 (human) | Promotes glucose uptake for aerobic glycolysis, coupling with the pentose phosphate shunt to facilitate biosynthesis of nucleotide and lipid, and generates nicotinamide adenine dinucleotide phosphate (NADPH) for redox homeostasis | Binds directly to target promoters, physically interacts with c-Myc, promotes chromatin recruitment of c-Myc, and enhances its transactivation activity | [ |
| Risa | chr10:63339203–63340913 (mouse) | Regulates insulin sensitivity | Overexpression of Risa decreases autophagy while knockdown of Risa up-regulates autophagy | [ |
| SRA | chr18:36667187–36670311 (mouse) | SRA KO mice are resistant to high fat diet-induced obesity, with decreased fat mass and increased lean content, and more insulin sensitivity | Functions as a transcriptional coactivator of PPARγ and promotes adipocyte differentiation in vitro | [ |
| βlinc1 | chr2:147204578–147212616 (mouse) | Deletion of βlinc1 results in defective islet development and disruption of glucose homeostasis in adult mice | Regulates a number of islet-specific transcription factors located in the genomic vicinity of βlinc1 | [ |