Literature DB >> 26024979

Basic biology and therapeutic implications of lncRNA.

O Khorkova1, J Hsiao1, C Wahlestedt2.   

Abstract

Long non-coding RNAs (lncRNA), a class of non-coding RNA molecules recently identified largely due to the efforts of FANTOM, and later GENCODE and ENCODE consortia, have been a subject of intense investigation in the past decade. Extensive efforts to get deeper understanding of lncRNA biology have yielded evidence of their diverse structural and regulatory roles in protecting chromosome integrity, maintaining genomic architecture, X chromosome inactivation, imprinting, transcription, translation and epigenetic regulation. Here we will briefly review the recent studies in the field of lncRNA biology focusing mostly on mammalian species and discuss their therapeutic implications.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  AntagoNAT; Epigenetic regulation; Imprinting; Natural antisense transcripts; Paraspeckles; Telomeres; lincRNA; vlincRNA

Mesh:

Substances:

Year:  2015        PMID: 26024979      PMCID: PMC4544752          DOI: 10.1016/j.addr.2015.05.012

Source DB:  PubMed          Journal:  Adv Drug Deliv Rev        ISSN: 0169-409X            Impact factor:   15.470


  99 in total

1.  Telomeric noncoding RNA TERRA is induced by telomere shortening to nucleate telomerase molecules at short telomeres.

Authors:  Emilio Cusanelli; Carmina Angelica Perez Romero; Pascal Chartrand
Journal:  Mol Cell       Date:  2013-09-26       Impact factor: 17.970

Review 2.  lincRNAs: genomics, evolution, and mechanisms.

Authors:  Igor Ulitsky; David P Bartel
Journal:  Cell       Date:  2013-07-03       Impact factor: 41.582

3.  Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase.

Authors:  Mohammad Ali Faghihi; Farzaneh Modarresi; Ahmad M Khalil; Douglas E Wood; Barbara G Sahagan; Todd E Morgan; Caleb E Finch; Georges St Laurent; Paul J Kenny; Claes Wahlestedt
Journal:  Nat Med       Date:  2008-06-29       Impact factor: 53.440

Review 4.  Oligonucleotides for upregulating gene expression.

Authors:  Olga Khorkova; Jane Hsiao; Claes Wahlestedt
Journal:  Pharm Pat Anal       Date:  2013-03

Review 5.  Guided by RNAs: X-inactivation as a model for lncRNA function.

Authors:  John E Froberg; Lin Yang; Jeannie T Lee
Journal:  J Mol Biol       Date:  2013-06-28       Impact factor: 5.469

6.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

Review 7.  Steroid receptor RNA activator (SRA1): unusual bifaceted gene products with suspected relevance to breast cancer.

Authors:  Etienne Leygue
Journal:  Nucl Recept Signal       Date:  2007-08-03

Review 8.  De-repressing LncRNA-Targeted Genes to Upregulate Gene Expression: Focus on Small Molecule Therapeutics.

Authors:  Roya Pedram Fatemi; Dmitry Velmeshev; Mohammad Ali Faghihi
Journal:  Mol Ther Nucleic Acids       Date:  2014-11-18       Impact factor: 10.183

Review 9.  Noncoding RNA in oncogenesis: a new era of identifying key players.

Authors:  Guorui Deng; Guangchao Sui
Journal:  Int J Mol Sci       Date:  2013-09-05       Impact factor: 5.923

Review 10.  The transcribed-ultraconserved regions: a novel class of long noncoding RNAs involved in cancer susceptibility.

Authors:  Paola Scaruffi
Journal:  ScientificWorldJournal       Date:  2011-02-03
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  105 in total

1.  Long non-coding RNA HOTTIP affects renal cell carcinoma progression by regulating autophagy via the PI3K/Akt/Atg13 signaling pathway.

Authors:  Yang Su; Jingxiao Lu; Xianguo Chen; Chaozhao Liang; Pengcheng Luo; Cong Qin; Jie Zhang
Journal:  J Cancer Res Clin Oncol       Date:  2018-12-03       Impact factor: 4.553

2.  Discovery and characterization of the first non-coding RNA that regulates gene expression, micF RNA: A historical perspective.

Authors:  Nicholas Delihas
Journal:  World J Biol Chem       Date:  2015-11-26

Review 3.  Long Non-coding RNAs and their Role in Metastasis.

Authors:  Ulrich H Weidle; Fabian Birzele; Gwen Kollmorgen; Rüdiger Rüger
Journal:  Cancer Genomics Proteomics       Date:  2017 May-Jun       Impact factor: 4.069

4.  CCDC26 knockdown enhances resistance of gastrointestinal stromal tumor cells to imatinib by interacting with c-KIT.

Authors:  Ke Cao; Minhuan Li; Ji Miao; Xiaofeng Lu; Xing Kang; Hao Zhu; Shangce Du; Xue Li; Qian Zhang; Wenxian Guan; Ying Dong; Xuefeng Xia
Journal:  Am J Transl Res       Date:  2018-01-15       Impact factor: 4.060

5.  The Evolving Druggability and Developability Space: Chemically Modified New Modalities and Emerging Small Molecules.

Authors:  Wenzhan Yang; Prajakta Gadgil; Venkata R Krishnamurthy; Margaret Landis; Pankajini Mallick; Dipal Patel; Phenil J Patel; Darren L Reid; Manuel Sanchez-Felix
Journal:  AAPS J       Date:  2020-01-03       Impact factor: 4.009

Review 6.  RNA delivery biomaterials for the treatment of genetic and rare diseases.

Authors:  Weiyu Zhao; Xucheng Hou; Olivia G Vick; Yizhou Dong
Journal:  Biomaterials       Date:  2019-06-20       Impact factor: 12.479

7.  PTB-AS, a Novel Natural Antisense Transcript, Promotes Glioma Progression by Improving PTBP1 mRNA Stability with SND1.

Authors:  Liyuan Zhu; Qunfang Wei; Yingjiao Qi; Xiangbin Ruan; Fan Wu; Liang Li; Junjie Zhou; Wei Liu; Tao Jiang; Jing Zhang; Bin Yin; Jiangang Yuan; Boqin Qiang; Wei Han; Xiaozhong Peng
Journal:  Mol Ther       Date:  2019-06-05       Impact factor: 11.454

8.  NEAT1 paraspeckle promotes human hepatocellular carcinoma progression by strengthening IL-6/STAT3 signaling.

Authors:  Shuai Wang; Qian Zhang; Qinlan Wang; Qicong Shen; Xiang Chen; Zhenyang Li; Ye Zhou; Jin Hou; Bowen Xu; Nan Li; Xuetao Cao
Journal:  Oncoimmunology       Date:  2018-08-06       Impact factor: 8.110

Review 9.  Role of lncRNAs in the Development of Ischemic Stroke and Their Therapeutic Potential.

Authors:  Kanika Vasudeva; Anyeasha Dutta; Anjana Munshi
Journal:  Mol Neurobiol       Date:  2021-04-05       Impact factor: 5.590

10.  LncRNA MEG8 Attenuates Cerebral Ischemia After Ischemic Stroke Through Targeting miR-130a-5p/VEGFA Signaling.

Authors:  Shihua Sui; Lei Sun; Wenjing Zhang; Jiamei Li; Jingcui Han; Jiaping Zheng; Hua Xin
Journal:  Cell Mol Neurobiol       Date:  2020-07-05       Impact factor: 5.046

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