Literature DB >> 30460993

The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018.

Jeffrey D Jensen1, Bret A Payseur2, Wolfgang Stephan3, Charles F Aquadro4, Michael Lynch5, Deborah Charlesworth6, Brian Charlesworth6.   

Abstract

A recent article reassessing the Neutral Theory of Molecular Evolution claims that it is no longer as important as is widely believed. The authors argue that "the neutral theory was supported by unreliable theoretical and empirical evidence from the beginning, and that in light of modern, genome-scale data, we can firmly reject its universality." Claiming that "the neutral theory has been overwhelmingly rejected," they propose instead that natural selection is the major force shaping both between-species divergence and within-species variation. Although this is probably a minority view, it is important to evaluate such claims carefully in the context of current knowledge, as inaccuracies can sometimes morph into an accepted narrative for those not familiar with the underlying science. We here critically examine and ultimately reject Kern and Hahn's arguments and assessment, and instead propose that it is now abundantly clear that the foundational ideas presented five decades ago by Kimura and Ohta are indeed correct.
© 2018 The Author(s). Evolution © 2018 The Society for the Study of Evolution.

Entities:  

Keywords:  Population Genetics; The Neutral Theory of Molecular Evolution

Mesh:

Year:  2018        PMID: 30460993      PMCID: PMC6496948          DOI: 10.1111/evo.13650

Source DB:  PubMed          Journal:  Evolution        ISSN: 0014-3820            Impact factor:   3.694


  34 in total

1.  Initial sequencing and analysis of the human genome.

Authors:  E S Lander; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; Y Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; J Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; A Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; M C Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; P Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; J B Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; S L Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; A P Abola; M J Proctor; R M Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; R Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; E E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; H Hermjakob; K Hokamp; W Jang; L S Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W J Kent; P Kitts; E V Koonin; I Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; J V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; E Stupka; J Szustakowki; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

Review 2.  Genetic hitchhiking versus background selection: the controversy and its implications.

Authors:  Wolfgang Stephan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

3.  The effects of demography and linkage on the estimation of selection and mutation parameters.

Authors:  Kai Zeng; Brian Charlesworth
Journal:  Genetics       Date:  2010-10-05       Impact factor: 4.562

4.  Controlling the false-positive rate in multilocus genome scans for selection.

Authors:  Kevin R Thornton; Jeffrey D Jensen
Journal:  Genetics       Date:  2006-11-16       Impact factor: 4.562

5.  Evolution in Mendelian Populations.

Authors:  S Wright
Journal:  Genetics       Date:  1931-03       Impact factor: 4.562

6.  Toward a selection theory of molecular evolution.

Authors:  Matthew W Hahn
Journal:  Evolution       Date:  2008-02       Impact factor: 3.694

Review 7.  Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation.

Authors:  Brian Charlesworth
Journal:  Nat Rev Genet       Date:  2009-03       Impact factor: 53.242

8.  Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster.

Authors:  D J Begun; C F Aquadro
Journal:  Nature       Date:  1992-04-09       Impact factor: 49.962

9.  Testing models of selection and demography in Drosophila simulans.

Authors:  Jeffrey D Wall; Peter Andolfatto; Molly Przeworski
Journal:  Genetics       Date:  2002-09       Impact factor: 4.562

10.  Pervasive natural selection in the Drosophila genome?

Authors:  Guy Sella; Dmitri A Petrov; Molly Przeworski; Peter Andolfatto
Journal:  PLoS Genet       Date:  2009-06-05       Impact factor: 5.917

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  36 in total

1.  A Fine-Scale Genetic Map for Vervet Monkeys.

Authors:  Susanne P Pfeifer
Journal:  Mol Biol Evol       Date:  2020-07-01       Impact factor: 16.240

2.  Toward an Evolutionarily Appropriate Null Model: Jointly Inferring Demography and Purifying Selection.

Authors:  Parul Johri; Brian Charlesworth; Jeffrey D Jensen
Journal:  Genetics       Date:  2020-03-09       Impact factor: 4.562

3.  How Good Are Predictions of the Effects of Selective Sweeps on Levels of Neutral Diversity?

Authors:  Brian Charlesworth
Journal:  Genetics       Date:  2020-10-26       Impact factor: 4.562

4.  On the completion of speciation.

Authors:  Nicholas H Barton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-07-13       Impact factor: 6.237

5.  Background Selection Does Not Mimic the Patterns of Genetic Diversity Produced by Selective Sweeps.

Authors:  Daniel R Schrider
Journal:  Genetics       Date:  2020-08-26       Impact factor: 4.562

6.  Strong neutral sweeps occurring during a population contraction.

Authors:  Antoine Moinet; Flávia Schlichta; Stephan Peischl; Laurent Excoffier
Journal:  Genetics       Date:  2022-04-04       Impact factor: 4.562

Review 7.  Neutral syndrome.

Authors:  Armand M Leroi; Ben Lambert; James Rosindell; Xiangyu Zhang; Giorgos D Kokkoris
Journal:  Nat Hum Behav       Date:  2020-05-11

Review 8.  The population genomics of within-host Mycobacterium tuberculosis.

Authors:  Ana Y Morales-Arce; Susanna J Sabin; Anne C Stone; Jeffrey D Jensen
Journal:  Heredity (Edinb)       Date:  2020-10-15       Impact factor: 3.821

9.  The genomic history of the Aegean palatial civilizations.

Authors:  Florian Clemente; Martina Unterländer; Olga Dolgova; Carlos Eduardo G Amorim; Francisco Coroado-Santos; Samuel Neuenschwander; Elissavet Ganiatsou; Diana I Cruz Dávalos; Lucas Anchieri; Frédéric Michaud; Laura Winkelbach; Jens Blöcher; Yami Ommar Arizmendi Cárdenas; Bárbara Sousa da Mota; Eleni Kalliga; Angelos Souleles; Ioannis Kontopoulos; Georgia Karamitrou-Mentessidi; Olga Philaniotou; Adamantios Sampson; Dimitra Theodorou; Metaxia Tsipopoulou; Ioannis Akamatis; Paul Halstead; Kostas Kotsakis; Dushka Urem-Kotsou; Diamantis Panagiotopoulos; Christina Ziota; Sevasti Triantaphyllou; Olivier Delaneau; Jeffrey D Jensen; J Víctor Moreno-Mayar; Joachim Burger; Vitor C Sousa; Oscar Lao; Anna-Sapfo Malaspinas; Christina Papageorgopoulou
Journal:  Cell       Date:  2021-04-29       Impact factor: 41.582

10.  Self-selection of evolutionary strategies: adaptive versus non-adaptive forces.

Authors:  Matthew Putnins; Ioannis P Androulakis
Journal:  Heliyon       Date:  2021-05-15
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