Literature DB >> 30442602

Splenomegaly Segmentation on Multi-Modal MRI Using Deep Convolutional Networks.

Yuankai Huo, Zhoubing Xu, Shunxing Bao, Camilo Bermudez, Hyeonsoo Moon, Prasanna Parvathaneni, Tamara K Moyo, Michael R Savona, Albert Assad, Richard G Abramson, Bennett A Landman.   

Abstract

The findings of splenomegaly, abnormal enlargement of the spleen, is a non-invasive clinical biomarker for liver and spleen diseases. Automated segmentation methods are essential to efficiently quantify splenomegaly from clinically acquired abdominal magnetic resonance imaging (MRI) scans. However, the task is challenging due to: 1) large anatomical and spatial variations of splenomegaly; 2) large inter- and intra-scan intensity variations on multi-modal MRI; and 3) limited numbers of labeled splenomegaly scans. In this paper, we propose the Splenomegaly Segmentation Network (SS-Net) to introduce the deep convolutional neural network (DCNN) approaches in multi-modal MRI splenomegaly segmentation. Large convolutional kernel layers were used to address the spatial and anatomical variations, while the conditional generative adversarial networks were employed to leverage the segmentation performance of SS-Net in an end-to-end manner. A clinically acquired cohort containing both T1-weighted (T1w) and T2-weighted (T2w) MRI splenomegaly scans was used to train and evaluate the performance of multi-atlas segmentation (MAS), 2D DCNN networks, and a 3-D DCNN network. From the experimental results, the DCNN methods achieved superior performance to the state-of-the-art MAS method. The proposed SS-Net method has achieved the highest median and mean Dice scores among the investigated baseline DCNN methods.

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Mesh:

Year:  2018        PMID: 30442602      PMCID: PMC7194446          DOI: 10.1109/TMI.2018.2881110

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  7 in total

1.  Stochastic tissue window normalization of deep learning on computed tomography.

Authors:  Yuankai Huo; Yucheng Tang; Yunqiang Chen; Dashan Gao; Shizhong Han; Shunxing Bao; Smita De; James G Terry; Jeffrey J Carr; Richard G Abramson; Bennett A Landman
Journal:  J Med Imaging (Bellingham)       Date:  2019-11-20

2.  Outlier Guided Optimization of Abdominal Segmentation.

Authors:  Yuchen Xu; Olivia Tang; Yucheng Tang; Ho Hin Lee; Yunqiang Chen; Dashan Gao; Shizhong Han; Riqiang Gao; Michael R Savona; Richard G Abramson; Yuankai Huo; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-03-10

3.  Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging.

Authors:  Shunxing Bao; Yucheng Tang; Ho Hin Lee; Riqiang Gao; Sophie Chiron; Ilwoo Lyu; Lori A Coburn; Keith T Wilson; Joseph T Roland; Bennett A Landman; Yuankai Huo
Journal:  Proc Mach Learn Res       Date:  2021-09

4.  Validation and Optimization of Multi-Organ Segmentation on Clinical Imaging Archives.

Authors:  Olivia Tang; Yuchen Xu; Yucheng Tang; Ho Hin Lee; Yunqiang Chen; Dashan Gao; Shizhong Han; Riqiang Gao; Michael R Savona; Richard G Abramson; Yuankai Huo; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-03-10

5.  Semi-Supervised Multi-Organ Segmentation through Quality Assurance Supervision.

Authors:  Ho Hin Lee; Yucheng Tang; Olivia Tang; Yuchen Xu; Yunqiang Chen; Dashan Gao; Shizhong Han; Riqiang Gao; Michael R Savona; Richard G Abramson; Yuankai Huo; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-03-10

6.  Validation and estimation of spleen volume via computer-assisted segmentation on clinically acquired CT scans.

Authors:  Yiyuan Yang; Yucheng Tang; Riqiang Gao; Shunxing Bao; Yuankai Huo; Matthew T McKenna; Michael R Savona; Richard G Abramson; Bennett A Landman
Journal:  J Med Imaging (Bellingham)       Date:  2021-02-19

Review 7.  Generative Adversarial Networks and Its Applications in Biomedical Informatics.

Authors:  Lan Lan; Lei You; Zeyang Zhang; Zhiwei Fan; Weiling Zhao; Nianyin Zeng; Yidong Chen; Xiaobo Zhou
Journal:  Front Public Health       Date:  2020-05-12
  7 in total

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