Literature DB >> 30416672

CONSTRUCTION OF SPATIOTEMPORAL NEONATAL CORTICAL SURFACE ATLASES USING A LARGE-SCALE DATASET.

Zhengwang Wu1, Gang Li1, Li Wang1, Weili Lin1, John H Gilmore2, Dinggang Shen1.   

Abstract

The cortical surface atlases constructed from a large representative population of neonates are highly needed in the neonatal neuroimaging studies. However, existing neonatal cortical surface atlases are typically constructed from small datasets, e.g., tens of subjects, which are inherently biased and thus are not representative to the neonatal population. In this paper, we construct neonatal cortical surface atlases based on a large-scale dataset with 764 subjects. To better characterize the dynamic cortical development during the first postnatal weeks, instead of constructing just a single atlas, we construct a set of spatiotemporal atlases at each week from 39 to 44 gestational weeks. The central idea is that, for all cortical surfaces, we first group-wisely register them into the common space to ensure the unbiasedness. Then, rather than simply averaging over the co-registered cortical surfaces, which generally leads to over-smoothed cortical folding patterns, we adopt a spherical patch-based sparse representation using an augmented dictionary to overcome the noises and potential registration errors. Through the group-wise sparsity constraint, we obtain consistent geometric cortical folding attributes on the atlases. Our atlases preserve the sharp cortical folding patterns, thus leading to better registration accuracy when aligning new subjects onto the atlases.

Entities:  

Keywords:  sparse representation; surface atlas

Year:  2018        PMID: 30416672      PMCID: PMC6223307          DOI: 10.1109/ISBI.2018.8363753

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  12 in total

Review 1.  Brain templates and atlases.

Authors:  Alan C Evans; Andrew L Janke; D Louis Collins; Sylvain Baillet
Journal:  Neuroimage       Date:  2012-01-10       Impact factor: 6.556

2.  An unbiased iterative group registration template for cortical surface analysis.

Authors:  Oliver Lyttelton; Maxime Boucher; Steven Robbins; Alan Evans
Journal:  Neuroimage       Date:  2006-12-26       Impact factor: 6.556

3.  Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system.

Authors:  B Fischl; M I Sereno; A M Dale
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

4.  Consistent reconstruction of cortical surfaces from longitudinal brain MR images.

Authors:  Gang Li; Jingxin Nie; Guorong Wu; Yaping Wang; Dinggang Shen
Journal:  Neuroimage       Date:  2011-11-15       Impact factor: 6.556

5.  A surface-based analysis of hemispheric asymmetries and folding of cerebral cortex in term-born human infants.

Authors:  Jason Hill; Donna Dierker; Jeffrey Neil; Terrie Inder; Andrew Knutsen; John Harwell; Timothy Coalson; David Van Essen
Journal:  J Neurosci       Date:  2010-02-10       Impact factor: 6.167

6.  Discovering Cortical Folding Patterns in Neonatal Cortical Surfaces Using Large-Scale Dataset.

Authors:  Yu Meng; Gang Li; Li Wang; Weili Lin; John H Gilmore; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

7.  Learning-Based Topological Correction for Infant Cortical Surfaces.

Authors:  Shijie Hao; Gang Li; Li Wang; Yu Meng; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

8.  LINKS: learning-based multi-source IntegratioN frameworK for Segmentation of infant brain images.

Authors:  Li Wang; Yaozong Gao; Feng Shi; Gang Li; John H Gilmore; Weili Lin; Dinggang Shen
Journal:  Neuroimage       Date:  2014-12-22       Impact factor: 6.556

9.  Construction of 4D high-definition cortical surface atlases of infants: Methods and applications.

Authors:  Gang Li; Li Wang; Feng Shi; John H Gilmore; Weili Lin; Dinggang Shen
Journal:  Med Image Anal       Date:  2015-04-17       Impact factor: 8.545

10.  4D Infant Cortical Surface Atlas Construction using Spherical Patch-based Sparse Representation.

Authors:  Zhengwang Wu; Gang Li; Yu Meng; Li Wang; Weili Lin; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2017-09-04
View more
  5 in total

1.  Construction of Spatiotemporal Infant Cortical Surface Functional Templates.

Authors:  Ying Huang; Fan Wang; Zhengwang Wu; Zengsi Chen; Han Zhang; Li Wang; Weili Lin; Dinggang Shen; Gang Li
Journal:  Med Image Comput Comput Assist Interv       Date:  2020-09-29

Review 2.  Computational neuroanatomy of baby brains: A review.

Authors:  Gang Li; Li Wang; Pew-Thian Yap; Fan Wang; Zhengwang Wu; Yu Meng; Pei Dong; Jaeil Kim; Feng Shi; Islem Rekik; Weili Lin; Dinggang Shen
Journal:  Neuroimage       Date:  2018-03-21       Impact factor: 6.556

3.  Intrinsic Patch-Based Cortical Anatomical Parcellation Using Graph Convolutional Neural Network on Surface Manifold.

Authors:  Zhengwang Wu; Fenqiang Zhao; Jing Xia; Li Wang; Weili Lin; John H Gilmore; Gang Li; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

4.  SPHERICAL U-NET FOR INFANT CORTICAL SURFACE PARCELLATION.

Authors:  Fenqiang Zhao; Shunren Xia; Zhengwang Wu; Li Wang; Zengsi Chen; Weili Lin; John H Gilmore; Dinggang Shen; Gang Li
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2019-07-11

5.  Mapping developmental regionalization and patterns of cortical surface area from 29 post-menstrual weeks to 2 years of age.

Authors:  Ying Huang; Zhengwang Wu; Fan Wang; Dan Hu; Tengfei Li; Lei Guo; Li Wang; Weili Lin; Gang Li
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-08       Impact factor: 12.779

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.