Literature DB >> 15366873

Site-specific variations of carbonyl chemical shift anisotropies in proteins.

Phineus R L Markwick1, Michael Sattler.   

Abstract

By combining molecular dynamics (MD) simulation with a novel extended density functional theory method, we calculate site-specific carbonyl chemical shift tensors in the SMN Tudor domain. We formulate a simple model for the C' chemical shift anisotropy (CSA) based solely on the isotropic chemical shift. Using this simple chemical shift tensor model and the MD simulation, an accurate prediction of transverse C'/N-H cross-correlated relaxation rates can be obtained.

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Year:  2004        PMID: 15366873     DOI: 10.1021/ja047859r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Comparison of fast backbone dynamics at amide nitrogen and carbonyl sites in dematin headpiece C-terminal domain and its S74E mutant.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Ying Li
Journal:  J Biomol NMR       Date:  2010-04-16       Impact factor: 2.835

2.  Peptide bond conformation in peptides and proteins probed by dipolar coupling-chemical shift tensor correlation solid-state NMR.

Authors:  Dwaipayan Mukhopadhyay; Chitrak Gupta; Theint Theint; Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2018-10-30       Impact factor: 2.229

3.  Efficient chi-tensor determination and NH assignment of paramagnetic proteins.

Authors:  Christophe Schmitz; Michael John; Ah Young Park; Nicholas E Dixon; Gottfried Otting; Guido Pintacuda; Thomas Huber
Journal:  J Biomol NMR       Date:  2006-06-10       Impact factor: 2.835

4.  Variability of the 15N chemical shielding tensors in the B3 domain of protein G from 15N relaxation measurements at several fields. Implications for backbone order parameters.

Authors:  Jennifer B Hall; David Fushman
Journal:  J Am Chem Soc       Date:  2006-06-21       Impact factor: 15.419

5.  Quantifying Lipari-Szabo modelfree parameters from 13CO NMR relaxation experiments.

Authors:  Tianzhi Wang; Daniel S Weaver; Sheng Cai; Erik R P Zuiderweg
Journal:  J Biomol NMR       Date:  2006-09-22       Impact factor: 2.835

6.  Vibrational averaging of chemical shift anisotropies in model peptides.

Authors:  Sishi Tang; David A Case
Journal:  J Biomol NMR       Date:  2007-06-12       Impact factor: 2.835

7.  Precise structural determination of weakly binding peptides by utilizing dihedral angle constraints.

Authors:  Yumiko Mizukoshi; Michiko Nagasu; Ichio Shimada; Hideo Takahashi
Journal:  J Biomol NMR       Date:  2010-03-14       Impact factor: 2.835

8.  Determination of 15N chemical shift anisotropy from a membrane-bound protein by NMR spectroscopy.

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Shivani Ahuja; Kumar Pichumani; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2012-06-04       Impact factor: 2.991

9.  Easy and unambiguous sequential assignments of intrinsically disordered proteins by correlating the backbone 15N or 13C' chemical shifts of multiple contiguous residues in highly resolved 3D spectra.

Authors:  Yuichi Yoshimura; Natalia V Kulminskaya; Frans A A Mulder
Journal:  J Biomol NMR       Date:  2015-01-11       Impact factor: 2.835

10.  13C NMR reveals no evidence of n-π* interactions in proteins.

Authors:  Bradley Worley; Georgia Richard; Gerard S Harbison; Robert Powers
Journal:  PLoS One       Date:  2012-08-02       Impact factor: 3.240

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