J Russell Huie1,2, Carlos A Almeida1,2, Adam R Ferguson1,2,3. 1. Weill Institute of Neurosciences, Brain and Spinal Injury Center (BASIC), University of California, San Francisco. 2. Zuckerberg San Francisco General Hospital and Trauma Center, San Francisco. 3. San Francisco Veterans Affairs Healthcare System, San Francisco, California, USA.
Abstract
PURPOSE OF REVIEW: The field of neurotrauma research faces a reproducibility crisis. In response, research leaders in traumatic brain injury (TBI) and spinal cord injury (SCI) are leveraging data curation and analytics methods to encourage transparency, and improve the rigor and reproducibility. Here we review the current challenges and opportunities that come from efforts to transform neurotrauma's big data to knowledge. RECENT FINDINGS: Three parallel movements are driving data-driven-discovery in neurotrauma. First, large multicenter consortia are collecting large quantities of neurotrauma data, refining common data elements (CDEs) that can be used across studies. Investigators are now testing the validity of CDEs in diverse research settings. Second, data sharing initiatives are working to make neurotrauma data findable, accessible, interoperable, and reusable (FAIR). These efforts are reflected by recent open data repository projects for preclinical and clinical neurotrauma. Third, machine learning analytics are allowing researchers to uncover novel data-driven-hypotheses and test new therapeutics in multidimensional outcome space. SUMMARY: We are on the threshold of a new era in data collection, curation, and analysis. The next phase of big data in neurotrauma research will require responsible data stewardship, a culture of data-sharing, and the illumination of 'dark data'.
PURPOSE OF REVIEW: The field of neurotrauma research faces a reproducibility crisis. In response, research leaders in traumatic brain injury (TBI) and spinal cord injury (SCI) are leveraging data curation and analytics methods to encourage transparency, and improve the rigor and reproducibility. Here we review the current challenges and opportunities that come from efforts to transform neurotrauma's big data to knowledge. RECENT FINDINGS: Three parallel movements are driving data-driven-discovery in neurotrauma. First, large multicenter consortia are collecting large quantities of neurotrauma data, refining common data elements (CDEs) that can be used across studies. Investigators are now testing the validity of CDEs in diverse research settings. Second, data sharing initiatives are working to make neurotrauma data findable, accessible, interoperable, and reusable (FAIR). These efforts are reflected by recent open data repository projects for preclinical and clinical neurotrauma. Third, machine learning analytics are allowing researchers to uncover novel data-driven-hypotheses and test new therapeutics in multidimensional outcome space. SUMMARY: We are on the threshold of a new era in data collection, curation, and analysis. The next phase of big data in neurotrauma research will require responsible data stewardship, a culture of data-sharing, and the illumination of 'dark data'.
Authors: Lindsay D Nelson; Jana Ranson; Adam R Ferguson; Joseph Giacino; David O Okonkwo; Alex Valadka; Geoffrey Manley; Michael McCrea Journal: J Neurotrauma Date: 2017-06-08 Impact factor: 5.269
Authors: Sue R Beers; Stephen R Wisniewski; Pamela Garcia-Filion; Ye Tian; Thomas Hahner; Rachel P Berger; Michael J Bell; P David Adelson Journal: J Neurotrauma Date: 2012-04-10 Impact factor: 5.269
Authors: Katrin Amunts; Christoph Ebell; Jeff Muller; Martin Telefont; Alois Knoll; Thomas Lippert Journal: Neuron Date: 2016-11-02 Impact factor: 17.173
Authors: Alison Callahan; Kim D Anderson; Michael S Beattie; John L Bixby; Adam R Ferguson; Karim Fouad; Lyn B Jakeman; Jessica L Nielson; Phillip G Popovich; Jan M Schwab; Vance P Lemmon Journal: Exp Neurol Date: 2017-05-30 Impact factor: 5.330
Authors: Douglas H Smith; Ramona R Hicks; Victoria E Johnson; Debra A Bergstrom; Diana M Cummings; Linda J Noble; David Hovda; Michael Whalen; Stephen T Ahlers; Michelle LaPlaca; Frank C Tortella; Ann-Christine Duhaime; C Edward Dixon Journal: J Neurotrauma Date: 2015-08-27 Impact factor: 5.269
Authors: John K Yue; Mary J Vassar; Hester F Lingsma; Shelly R Cooper; David O Okonkwo; Alex B Valadka; Wayne A Gordon; Andrew I R Maas; Pratik Mukherjee; Esther L Yuh; Ava M Puccio; David M Schnyer; Geoffrey T Manley Journal: J Neurotrauma Date: 2013-09-24 Impact factor: 5.269
Authors: Jenny Haefeli; Adam R Ferguson; Deborah Bingham; Adrienne Orr; Seok Joon Won; Tina I Lam; Jian Shi; Sarah Hawley; Jialing Liu; Raymond A Swanson; Stephen M Massa Journal: Sci Rep Date: 2017-02-16 Impact factor: 4.379
Authors: Shara I Feld; Daniel S Hippe; Ljubomir Miljacic; Nayak L Polissar; Shu-Fang Newman; Bala G Nair; Monica S Vavilala Journal: J Neurosurg Anesthesiol Date: 2021-11-11 Impact factor: 3.969
Authors: J R Huie; A R Ferguson; N Kyritsis; J Z Pan; K-A Irvine; J L Nielson; P G Schupp; M C Oldham; J C Gensel; A Lin; M R Segal; R R Ratan; J C Bresnahan; M S Beattie Journal: Sci Rep Date: 2021-02-09 Impact factor: 4.379
Authors: Abel Torres-Espín; Austin Chou; J Russell Huie; Nikos Kyritsis; Pavan S Upadhyayula; Adam R Ferguson Journal: Elife Date: 2021-01-14 Impact factor: 8.140
Authors: J Russell Huie; Austin Chou; Abel Torres-Espin; Jessica L Nielson; Esther L Yuh; Raquel C Gardner; Ramon Diaz-Arrastia; Geoff T Manley; Adam R Ferguson Journal: Front Neurol Date: 2021-11-03 Impact factor: 4.003
Authors: Austin Chou; Abel Torres-Espín; J Russell Huie; Karen Krukowski; Sangmi Lee; Amber Nolan; Caroline Guglielmetti; Bridget E Hawkins; Myriam M Chaumeil; Geoffrey T Manley; Michael S Beattie; Jacqueline C Bresnahan; Maryann E Martone; Jeffrey S Grethe; Susanna Rosi; Adam R Ferguson Journal: Neurotrauma Rep Date: 2022-04-05
Authors: Carlos A Almeida; Abel Torres-Espin; J Russell Huie; Dongming Sun; Linda J Noble-Haeusslein; Wise Young; Michael S Beattie; Jacqueline C Bresnahan; Jessica L Nielson; Adam R Ferguson Journal: Neuroinformatics Date: 2021-03-02