Literature DB >> 30379703

Neurotrauma as a big-data problem.

J Russell Huie1,2, Carlos A Almeida1,2, Adam R Ferguson1,2,3.   

Abstract

PURPOSE OF REVIEW: The field of neurotrauma research faces a reproducibility crisis. In response, research leaders in traumatic brain injury (TBI) and spinal cord injury (SCI) are leveraging data curation and analytics methods to encourage transparency, and improve the rigor and reproducibility. Here we review the current challenges and opportunities that come from efforts to transform neurotrauma's big data to knowledge. RECENT
FINDINGS: Three parallel movements are driving data-driven-discovery in neurotrauma. First, large multicenter consortia are collecting large quantities of neurotrauma data, refining common data elements (CDEs) that can be used across studies. Investigators are now testing the validity of CDEs in diverse research settings. Second, data sharing initiatives are working to make neurotrauma data findable, accessible, interoperable, and reusable (FAIR). These efforts are reflected by recent open data repository projects for preclinical and clinical neurotrauma. Third, machine learning analytics are allowing researchers to uncover novel data-driven-hypotheses and test new therapeutics in multidimensional outcome space.
SUMMARY: We are on the threshold of a new era in data collection, curation, and analysis. The next phase of big data in neurotrauma research will require responsible data stewardship, a culture of data-sharing, and the illumination of 'dark data'.

Entities:  

Mesh:

Year:  2018        PMID: 30379703      PMCID: PMC7075373          DOI: 10.1097/WCO.0000000000000614

Source DB:  PubMed          Journal:  Curr Opin Neurol        ISSN: 1350-7540            Impact factor:   5.710


  35 in total

1.  Quantitative CT improves outcome prediction in acute traumatic brain injury.

Authors:  Esther L Yuh; Shelly R Cooper; Adam R Ferguson; Geoffrey T Manley
Journal:  J Neurotrauma       Date:  2011-12-08       Impact factor: 5.269

Review 2.  The Allen Brain Atlas: 5 years and beyond.

Authors:  Allan R Jones; Caroline C Overly; Susan M Sunkin
Journal:  Nat Rev Neurosci       Date:  2009-10-14       Impact factor: 34.870

3.  Validating Multidimensional Outcome Assessment Using the TBI Common Data Elements: An Analysis of the TRACK-TBI Pilot Sample.

Authors:  Lindsay D Nelson; Jana Ranson; Adam R Ferguson; Joseph Giacino; David O Okonkwo; Alex Valadka; Geoffrey Manley; Michael McCrea
Journal:  J Neurotrauma       Date:  2017-06-08       Impact factor: 5.269

4.  Validity of a pediatric version of the Glasgow Outcome Scale-Extended.

Authors:  Sue R Beers; Stephen R Wisniewski; Pamela Garcia-Filion; Ye Tian; Thomas Hahner; Rachel P Berger; Michael J Bell; P David Adelson
Journal:  J Neurotrauma       Date:  2012-04-10       Impact factor: 5.269

5.  The Human Brain Project: Creating a European Research Infrastructure to Decode the Human Brain.

Authors:  Katrin Amunts; Christoph Ebell; Jeff Muller; Martin Telefont; Alois Knoll; Thomas Lippert
Journal:  Neuron       Date:  2016-11-02       Impact factor: 17.173

Review 6.  Developing a data sharing community for spinal cord injury research.

Authors:  Alison Callahan; Kim D Anderson; Michael S Beattie; John L Bixby; Adam R Ferguson; Karim Fouad; Lyn B Jakeman; Jessica L Nielson; Phillip G Popovich; Jan M Schwab; Vance P Lemmon
Journal:  Exp Neurol       Date:  2017-05-30       Impact factor: 5.330

7.  Pre-Clinical Traumatic Brain Injury Common Data Elements: Toward a Common Language Across Laboratories.

Authors:  Douglas H Smith; Ramona R Hicks; Victoria E Johnson; Debra A Bergstrom; Diana M Cummings; Linda J Noble; David Hovda; Michael Whalen; Stephen T Ahlers; Michelle LaPlaca; Frank C Tortella; Ann-Christine Duhaime; C Edward Dixon
Journal:  J Neurotrauma       Date:  2015-08-27       Impact factor: 5.269

8.  Transforming research and clinical knowledge in traumatic brain injury pilot: multicenter implementation of the common data elements for traumatic brain injury.

Authors:  John K Yue; Mary J Vassar; Hester F Lingsma; Shelly R Cooper; David O Okonkwo; Alex B Valadka; Wayne A Gordon; Andrew I R Maas; Pratik Mukherjee; Esther L Yuh; Ava M Puccio; David M Schnyer; Geoffrey T Manley
Journal:  J Neurotrauma       Date:  2013-09-24       Impact factor: 5.269

Review 9.  A field guide to whole-genome sequencing, assembly and annotation.

Authors:  Robert Ekblom; Jochen B W Wolf
Journal:  Evol Appl       Date:  2014-06-24       Impact factor: 5.183

10.  A data-driven approach for evaluating multi-modal therapy in traumatic brain injury.

Authors:  Jenny Haefeli; Adam R Ferguson; Deborah Bingham; Adrienne Orr; Seok Joon Won; Tina I Lam; Jian Shi; Sarah Hawley; Jialing Liu; Raymond A Swanson; Stephen M Massa
Journal:  Sci Rep       Date:  2017-02-16       Impact factor: 4.379

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  8 in total

1.  Data Dissemination: Shortening the Long Tail of Traumatic Brain Injury Dark Data.

Authors:  Bridget E Hawkins; J Russell Huie; Carlos Almeida; Jiapei Chen; Adam R Ferguson
Journal:  J Neurotrauma       Date:  2019-03-29       Impact factor: 5.269

2.  A Machine Learning Approach for Predicting Real-time Risk of Intraoperative Hypotension in Traumatic Brain Injury.

Authors:  Shara I Feld; Daniel S Hippe; Ljubomir Miljacic; Nayak L Polissar; Shu-Fang Newman; Bala G Nair; Monica S Vavilala
Journal:  J Neurosurg Anesthesiol       Date:  2021-11-11       Impact factor: 3.969

3.  Machine intelligence identifies soluble TNFa as a therapeutic target for spinal cord injury.

Authors:  J R Huie; A R Ferguson; N Kyritsis; J Z Pan; K-A Irvine; J L Nielson; P G Schupp; M C Oldham; J C Gensel; A Lin; M R Segal; R R Ratan; J C Bresnahan; M S Beattie
Journal:  Sci Rep       Date:  2021-02-09       Impact factor: 4.379

4.  Reproducible analysis of disease space via principal components using the novel R package syndRomics.

Authors:  Abel Torres-Espín; Austin Chou; J Russell Huie; Nikos Kyritsis; Pavan S Upadhyayula; Adam R Ferguson
Journal:  Elife       Date:  2021-01-14       Impact factor: 8.140

5.  COVID-19 and Traumatic Brain Injury (TBI); What We Can Learn From the Viral Pandemic to Better Understand the Biology of TBI, Improve Diagnostics and Develop Evidence-Based Treatments.

Authors:  Denes V Agoston
Journal:  Front Neurol       Date:  2021-12-20       Impact factor: 4.003

6.  FAIR Data Reuse in Traumatic Brain Injury: Exploring Inflammation and Age as Moderators of Recovery in the TRACK-TBI Pilot.

Authors:  J Russell Huie; Austin Chou; Abel Torres-Espin; Jessica L Nielson; Esther L Yuh; Raquel C Gardner; Ramon Diaz-Arrastia; Geoff T Manley; Adam R Ferguson
Journal:  Front Neurol       Date:  2021-11-03       Impact factor: 4.003

7.  Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research.

Authors:  Austin Chou; Abel Torres-Espín; J Russell Huie; Karen Krukowski; Sangmi Lee; Amber Nolan; Caroline Guglielmetti; Bridget E Hawkins; Myriam M Chaumeil; Geoffrey T Manley; Michael S Beattie; Jacqueline C Bresnahan; Maryann E Martone; Jeffrey S Grethe; Susanna Rosi; Adam R Ferguson
Journal:  Neurotrauma Rep       Date:  2022-04-05

8.  Excavating FAIR Data: the Case of the Multicenter Animal Spinal Cord Injury Study (MASCIS), Blood Pressure, and Neuro-Recovery.

Authors:  Carlos A Almeida; Abel Torres-Espin; J Russell Huie; Dongming Sun; Linda J Noble-Haeusslein; Wise Young; Michael S Beattie; Jacqueline C Bresnahan; Jessica L Nielson; Adam R Ferguson
Journal:  Neuroinformatics       Date:  2021-03-02
  8 in total

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