| Literature DB >> 30354329 |
Sander W van der Laan1, Marten A Siemelink1,2, Saskia Haitjema1, Hassan Foroughi Asl3, Ljubica Perisic4, Michal Mokry5,6, Jessica van Setten7, Rainer Malik8, Martin Dichgans8,9, Bradford B Worrall10, Nilesh J Samani11,12, Heribert Schunkert13, Jeanette Erdmann13, Ulf Hedin4, Gabrielle Paulsson-Berne14, Johan L M Björkegrenn15,16,17, Gert J de Borst18, Folkert W Asselbergs7,19,20,21,22,23,24, Folkert W den Ruijter7, Paul I W de Bakker19,20, Gerard Pasterkamp1,2,21.
Abstract
BACKGROUND: Atherosclerosis is a chronic inflammatory disease in part caused by lipid uptake in the vascular wall, but the exact underlying mechanisms leading to acute myocardial infarction and stroke remain poorly understood. Large consortia identified genetic susceptibility loci that associate with large artery ischemic stroke and coronary artery disease. However, deciphering their underlying mechanisms are challenging. Histological studies identified destabilizing characteristics in human atherosclerotic plaques that associate with clinical outcome. To what extent established susceptibility loci for large artery ischemic stroke and coronary artery disease relate to plaque characteristics is thus far unknown but may point to novel mechanisms.Entities:
Keywords: atherosclerosis; cardiovascular disease; coronary artery disease; genetic loci; plaque, atherosclerotic; quantitative trait loci; stroke
Mesh:
Substances:
Year: 2018 PMID: 30354329 PMCID: PMC7664607 DOI: 10.1161/CIRCGEN.118.002115
Source DB: PubMed Journal: Circ Genom Precis Med ISSN: 2574-8300
Clinical Characteristics of the AE, BiKE, and STAGE
CAD and LAS Susceptibility Loci and Their Association With Quantitative Plaque Phenotypes
CAD and LAS Susceptibility Loci and Their Association With Semi-Quantitative Plaque Phenotypes
Figure 1.Associations of genetic variants in 7q22 with carotid intraplaque fat. Rs12539895 was previously associated with coronary artery disease (CAD; purple). The strongest association was for a deletion chr7:106901393 (triglycerides [TG] >T; P=2.14×10−7; pink). The x axis shows the chromosomal position relative to 1000G (March 2012, Hg19). The lower shows refSeq canonical genes from UCSC (the black arrow indicates the direction of transcription). The left y axis shows the −log10(P value) of the association with intraplaque fat. The right y axis shows the recombination rate (gray line in the middle). The middle shows each associated variant colored by the r2 relative to rs12539895. The legend in the upper right corner shows the r2 color scale. The per variant annotation key is depicted in the bottom left corner. Made using LocusZoom version 1.3 and SNiPA.[19,20] COG5 indicates component of oligomeric Golgi complex 5; CpG, cytosine-guanine dinucleotide; eQTL, expression quantitative trait loci; HBP1, HMG-box transcription factor 1; and mQTL, methylation quantitative trait loci.
Figure 2.Association of rs3815148 with Rs3815148 is a proxy (LD r2=0.91) for rs12539895 and associated (P=7.0×10−6) with HBP1 expression in carotid plaques from BiKE. A, Regional association of variants with HBP1 expression in carotid plaques. The x axis shows the chromosomal position relative to 1000G (March 2012, Hg19) and refSeq canonical genes (green) from UCSC (the black arrow indicates the direction of transcription). The left y axis shows the −log10 P value of the association with HBP1 expression. The right y axis shows the recombination rate (gray line). The middle shows each associated variant colored by the r2 relative to rs12539895. The legend in the upper right corner shows the r2 color scale. B, Boxplot of the association of rs3815148 with HBP1 expression. Proxy data based on 1000G phase 3, version 5 data from SNiPA.[20] Made using LocusZoom version 1.3.[19]
Figure 3.Polygenic scores of coronary artery disease (CAD; dark pink) and large artery stroke (LAS; blue) associate with different plaque characteristics. Polygenic scores for CAD associate with intraplaque fat (A), whereas polygenic scores for LAS associate with intraplaque hemorrhage (B) and smooth muscle cells (C). Scores were constructed based on GWAS (Genome-Wide Association Study) summary statistics using increasingly liberal P value thresholds (PT, see also Information in the Data Supplement; Table II in the Data Supplement). Each PT bin is depicted on the x axis. The y axis indicate the r2 of the association; please note the different scales. *P<0.05 for association of the score with the plaque characteristic. PGC indicates bipolar disorder from the Psychiatric Genetics Consortium (green).