Literature DB >> 643604

Thermal denaturation of nucleosomal core particles.

W O Weischet, K Tatchell, K E Van Holde, H Klump.   

Abstract

Thermal denaturation of very homogeneous preparations of core particles from chicken erythrocyte chromatin is studied by several techniques. The change in absorbance, which is very closely paralleled by changes in heat capacity, which is very closely paralleled by changes in heat capacity, is a biphasic process with inflexions at 60 degrees C and 74 degrees C. In contrast, isolated DNA of the same length denatures in a single transition around 44 degrees C. Monitoring the circular dichroism of the cores during thermal denaturation reveals biphasic changes in the secondary structure of the DNA, preceding the base unstacking by 10 degrees C in the first and 3 degrees C in the second phase. However, measurable alterations in the secondary structure of the histones are confined to the second phase with a melting temperature at 71 degrees C. Increase in the ionic strength of the buffer from 1 mM to 10 mM leads to almost monophasic melting curves as measured by absorbance and CD, while not causing any measurable conformational changes at room temperature. The melting of core particles is interpreted as a denaturation of about 40 base pairs in the first phase, followed by a massive breakdown of the native structure of a tight histone-DNA complex, which frees the remaining 100 base pairs for unstacking.

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Year:  1978        PMID: 643604      PMCID: PMC341967          DOI: 10.1093/nar/5.1.139

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  36 in total

1.  Sedimentation of homogeneous double-strand DNA molecules.

Authors:  R T Kovacic; K E van Holde
Journal:  Biochemistry       Date:  1977-04-05       Impact factor: 3.162

2.  Chromatin and nucleosome structure.

Authors:  R Mandel; G D Fasman
Journal:  Nucleic Acids Res       Date:  1976-08       Impact factor: 16.971

3.  Preparation and physical characterization of a homogeneous population of monomeric nucleosomes from HeLa cells.

Authors:  J P Whitlock; R T Simpson
Journal:  Nucleic Acids Res       Date:  1976-09       Impact factor: 16.971

4.  Calorimetric studies of the interaction between DNA and poly-L-lysine.

Authors:  H Klump
Journal:  Biophys Chem       Date:  1976-09       Impact factor: 2.352

5.  Localization of the sites along nucleosome DNA which interact with NH2-terminal histone regions.

Authors:  J P Whitlock; R T Simpson
Journal:  J Biol Chem       Date:  1977-09-25       Impact factor: 5.157

6.  Secondary structure of histones and DNA in chromatin.

Authors:  G J Thomas; B Prescott; D E Olins
Journal:  Science       Date:  1977-07-22       Impact factor: 47.728

7.  Analysis of chromatin-associated fiber arrays.

Authors:  C D Laird; L E Wilkinson; V E Foe; W Y Chooi
Journal:  Chromosoma       Date:  1976-10-28       Impact factor: 4.316

8.  Helix coil transitions of d(A)n-d(T)n, d(A-T)n-d(A-T)n, and d(A-A-T)n-d(A-T-T)n; evaluation of parameters governing DNA stability.

Authors:  A L Oliver; R M Wartell; R L Ratliff
Journal:  Biopolymers       Date:  1977-05       Impact factor: 2.505

9.  A pH-dependent interaction between histones H2A and H2B involving secondary and tertiary folding.

Authors:  T Moss; P D Cary; B D Abercrombie; C Crane-Robinson; E M Bradbury
Journal:  Eur J Biochem       Date:  1976-12-11

10.  Conformational state of DNA in chromatin subunits. Circular dichroism, melting, and ethidium bromide binding analysis.

Authors:  J J Lawrence; D C Chan; L H Piette
Journal:  Nucleic Acids Res       Date:  1976-11       Impact factor: 16.971

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  48 in total

1.  Nucleosomal occupancy and CGG repeat expansion: a comparative analysis of triplet repeat region from mouse and human fragile X mental retardation gene 1.

Authors:  Sonal Datta; Mohammad Parwez Alam; Subeer S Majumdar; Abhishek Kumar Mehta; Souvik Maiti; Neerja Wadhwa; Vani Brahmachari
Journal:  Chromosome Res       Date:  2011-04-16       Impact factor: 5.239

2.  Reconstitution of hyperacetylated, DNase I-sensitive chromatin characterized by high conformational flexibility of nucleosomal DNA.

Authors:  W A Krajewski; P B Becker
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

3.  Gal4p-mediated chromatin remodeling depends on binding site position in nucleosomes but does not require DNA replication.

Authors:  M Xu; R T Simpson; M P Kladde
Journal:  Mol Cell Biol       Date:  1998-03       Impact factor: 4.272

4.  Effects of DNA supercoiling on the topological properties of nucleosomes.

Authors:  M M Garner; G Felsenfeld; M H O'Dea; M Gellert
Journal:  Proc Natl Acad Sci U S A       Date:  1987-05       Impact factor: 11.205

5.  Physical properties of inner histone-DNA complexes.

Authors:  P N Bryan; E B Wright; M H Hsie; A L Olins; D E Olins
Journal:  Nucleic Acids Res       Date:  1978-10       Impact factor: 16.971

6.  Effect of the B--Z transition in poly(dG-m5dC) . poly(dG-m5dC) on nucleosome formation.

Authors:  J Nickol; M Behe; G Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  1982-03       Impact factor: 11.205

7.  Cromatin and core particles formed from the inner histones and synthetic polydeoxyribonucleotides of defined sequence.

Authors:  R T Simpson; P Künzler
Journal:  Nucleic Acids Res       Date:  1979-04       Impact factor: 16.971

8.  Core nucleosomes by digestion of reconstructed histone-DNA complexes.

Authors:  P N Bryan; E B Wright; D E Olins
Journal:  Nucleic Acids Res       Date:  1979-04       Impact factor: 16.971

9.  Positioned nucleosomes inhibit Dam methylation in vivo.

Authors:  M P Kladde; R T Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  1994-02-15       Impact factor: 11.205

10.  Conformation of DNA in chromatin core particles containing poly(dAdT)-poly(dAdT) studied by 31 P NMR spectroscopy.

Authors:  R T Simpson; H Shindo
Journal:  Nucleic Acids Res       Date:  1979-09-25       Impact factor: 16.971

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