| Literature DB >> 36090048 |
Giuseppina Bonizzi1, Lorenzo Zattoni1,2, Maria Capra1, Cristina Cassi1, Giulio Taliento1, Mariia Ivanova3, Elena Guerini-Rocco2,3, Marzia Fumagalli4, Massimo Monturano5, Adriana Albini6, Giuseppe Viale1,2,3, Roberto Orecchia6, Nicola Fusco1,2,3.
Abstract
Biobanks are biorepositories that collect, process, store, catalog, and distribute human biological samples, and record the associated data. The role and action field of these strategic infrastructures for implementing precision medicine in translational research is continuously evolving. To ensure the optimal quality at all stages of biobanking, specific protocols are required and should be elaborated according to updated guidelines, recommendations, laws, and rules. This article illustrates the standard operating procedures, including protocols, troubleshooting, and quality controls, of a fully certified biobank in a referral Cancer Center. This model involves all clinical departments and research groups to support the dual mission of academic cancer centers, i.e. to provide high-quality care and high-quality research. All biobanking activities based on the type of biological specimens are detailed and the most tricky methodological aspects are discussed, from patients' informed consent to specimen management.Entities:
Keywords: biobank; biomarkers; cancer research; liquid biopsy; quality control; standard operating procedures; tissue samples; translational research
Year: 2022 PMID: 36090048 PMCID: PMC9459387 DOI: 10.3389/fmolb.2022.967310
Source DB: PubMed Journal: Front Mol Biosci ISSN: 2296-889X
FIGURE 1Integration of the laboratory information management system (LIMS) of biobanks in the critical junction of data from different sources.
FIGURE 2Different types of biospecimens collected in a standard biobank. PMBC, peripheral blood mononuclear cells.
Examples of non-tissue sample types and corresponding biobank codes.
| Matrix | Code |
|---|---|
| ASCITES | AS |
| WHOLE BLOOD | BL |
| BRONCHOSCOPY | BS |
| BUCCAL SWAB | BU |
| BUFFY COAT | BC |
| CYTOLOGICAL SAMPLE, NOS | CY |
| FECES | F |
| PERIPHERAL BLOOD MONONUCLEAR CELLS (PBMCs) | PB |
| BLOOD PLASMA | PL |
| BLOOD SERUM | SE |
| TUBE BRUSHING | TB |
| URINE | U |
Examples of tissue sample types and corresponding biobank codes.
| Atrix | Code |
|---|---|
| ABDOMEN, NOS | A |
| ADRENAL GLAND | AG |
| BONE TISSUE | BO |
| BONE MARROW | BM |
| BRAIN | BR |
| BREAST, NOS | B |
| BREAST - LEFT | B1 |
| BREAST - RIGHT | B2 |
| MESENTERY | M |
| CERVIX | CE |
| COLON | C |
| ESOPHAGUS | E |
| FIMBRIA, NOS | FI |
| FIMBRIA - LEFT | FI1 |
| FIMBRIA - RIGHT | FI2 |
| KIDNEY | K |
| ILEUM | I |
| LARYNX | LA |
| LIVER | LI |
| LUNG, NOS | L |
| LUNG - LEFT | L1 |
| LUNG - RIGHT | L2 |
| LYMPH NODE | LN |
| LYMPH NODE-ABDOMINAL | LNA |
| MESENTERY | M |
| NASOPHARYNX | NA |
| OMENTUM | OM |
| ORAL CAVITY | OR |
| OROPHARYNX | OP |
| OVARY, NOS | O |
| OVARY - LEFT | O1 |
| OVARY - RIGHT | O2 |
| PANCREAS | PA |
| PHARYNX | PH |
| PERITONEUM | PE |
| PROSTATE |
|
| RECTUM | R |
| SKIN | SK |
| SOFT TISSUES | ST |
| STOMACH | S |
| TESTIS | TE |
| THYMUS | TH |
| THYROID | T |
| TONGUE | TO |
| FALLOPIAN TUBE | TU |
| URINARY BLADDER | UB |
| UTERUS CORPUS | UC |
Representative quality Control Form of tissue sections included in OCT and frozen.
| Label with biobank code | — |
|---|---|
| Tumor Tissue (%) | — |
| Tumor Tissue Description | — |
| Normal Tissue Counterpart (%) | — |
| Normal Tissue Counterpart Description | — |
| Necrotic Tissue (%) | — |
| Adipose Tissue (%) | — |
| Stromal Tissue (%) | — |
| Inflammation | ☐ Absent |
| ☐ Sparse | |
| ☐ Intermediate | |
| ☐ Extensive | |
| Diameter of Section (mm) | |
| Conclusion | ☐ Insufficient |
| ☐ Sufficient | |
| Notes | — |
| Technical Operator | — |
| Pathologist Operator | — |
FIGURE 3Types and number of samples collected by the biobank of the European Institute of Oncology by year. (A) Cumulative collection of tissue and blood/serum samples; (B) Cumulative collection of breast tissue samples; (C) Cumulative collection of tumor samples from the ovary, prostate, lung, and colon; (D) Cumulative collection of non-tissue samples, i.e. feces, saliva/swab, plasma, and urine.
Distribution of samples aliquots from the biobank of the European Institute of Oncology.
| Project ID | 2012 | 2013 | 2014 | 2015 | 2016 | 2017 | 2018 | 2019 | 2020 | 2021 | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|
| T-CELL | — | — | — | — | — | — | 46 | 182 | 144 | 137 | 509 |
| BLADDER | — | — | — | — | 5 | 16 | — | — | — | — | 21 |
| BREAST-1 | 1,168 | 1,611 | 1,340 | 756 | 258 | 65 | 217 | 160 | 12 | 40 | 5,627 |
| BREAST-2 | — | — | — | — | — | — | 26 | 79 | 100 | 65 | 270 |
| BREAST-3 | — | — | — | — | — | — | — | 122 | 122 | 90 | 334 |
| COLON-1 | — | — | — | — | — | — | 22 | — | 185 | — | 207 |
| COLON-2 | — | — | — | 46 | 85 | 97 | 105 | 37 | — | — | 370 |
| COLON-3 | — | — | — | — | — | — | 20 | 14 | 13 | — | 47 |
| COLON-4 | — | — | — | — | — | — | — | 563 | — | — | 563 |
| COSMOS | 5 | 14 | 4 | 3,000 | 363 | — | — | — | — | — | 3,386 |
| FAM | — | — | — | — | 164 | — | — | — | — | — | 164 |
| H&N-1 | — | — | — | 6 | 46 | 22 | 56 | 51 | 20 | 134 | 335 |
| H&N-2 | — | — | — | — | — | — | — | — | — | 35 | 35 |
| H&N-3 | — | — | — | — | — | — | — | — | — | 65 | 65 |
| LUNG-1 | 246 | 311 | 338 | 103 | 26 | 20 | — | — | — | — | 1,044 |
| LUNG-2 | — | — | — | — | — | — | — | 80 | 498 | 342 | 920 |
| LUNG-3 | — | — | — | — | — | — | 186 | — | — | — | 186 |
| MEL-1 | — | — | — | — | — | — | — | — | — | 2 | 2 |
| MEL-2 | — | — | — | — | — | — | — | 628 | 752 | 417 | 1,797 |
| miRNA | 120 | 117 | 206 | 214 | 50 | — | — | — | — | — | 707 |
| OVARY-1 | 320 | 569 | 696 | 561 | 402 | 312 | 204 | 664 | 146 | 166 | 4,040 |
| OVARY-2 | 26 | 113 | 102 | 77 | 318 | ||||||
| PROSTATE | 275 | 545 | 299 | 200 | 127 | 128 | 181 | 66 | 23 | 1,844 | |
| SARCOMA | — | — | — | — | — | — | — | — | — | 9 | 9 |
| SKIN | — | — | — | — | — | — | 23 | 10 | — | 47 | 80 |
| STOMACH | — | — | — | — | — | — | — | — | — | 193 | 193 |
| TEST COVID | — | — | — | — | — | — | — | 692 | 692 | ||
| THYMUS | — | — | — | — | 2 | 19 | 24 | 18 | 11 | 13 | 87 |
|
| 2,134 | 3,167 | 2,883 | 4,886 | 1,528 | 679 | 1,136 | 2,787 | 2,820 | 1,832 | 23,852 |
European Committee for Standardization Technical Committee (CEN/TC) 140 in vitro diagnostic medical devices published standards. All projects are sorted by date and available at https://www.spidia.eu/projects/standard-documents (Accessed 28 July 2022).
| References | Date | Title |
|---|---|---|
| CEN/TS 17811:2022 | 22 June 2022 | Molecular |
| CEN/TS 17747:2022 | 20 April 2022 | Molecular |
| CEN/TS 17742:2022 | 30 March 2022 | Molecular |
| EN ISO 20776-2:2022 | 19 January 2022 | Clinical laboratory testing and |
| CEN/TS 17688-2:2021 | 22 December 2021 | Molecular |
| CEN/TS 17688-1:2021 | 22 December 2021 | Molecular |
| CEN/TS 17688-3:2021 | 22 December 2021 | Molecular |
| EN ISO 4307:2021 | 3 November 2021 | Molecular |
| EN ISO 16256:2021 | 27 October 2021 | Clinical laboratory testing and |
| EN ISO 6717:2021 | 8 September 2021 |
|
| EN ISO 20166-4:2021 | 28 July 2021 | Molecular |
| EN ISO 23162:2021 | 14 July 2021 | Basic semen examination - Specification and test methods (ISO 23162:2021) |
| EN ISO 17511:2021 | 2 June 2021 |
|
| EN ISO 23118:2021 | 2 June 2021 | Molecular |
| EN ISO 20184-3:2021 | 26 May 2021 | Molecular |
| CEN/TS 17626:2021 | 5 May 2021 | Molecular |
| EN ISO 20776-1:2020 | 1 July 2020 | Susceptibility testing of infectious agents and evaluation of performance of antimicrobial susceptibility test devices - Part 1: Broth micro-dilution References method for testing the |
| EN ISO 22367:2020 | 11 March 2020 | Medical laboratories - Application of risk management to medical laboratories (ISO 22367:2020) |
| CEN/TS 17390-1:2020 | 22 January 2020 | Molecular |
| CEN/TS 17390-2:2020 | 22 January 2020 | Molecular |
| CEN/TS 17390-3:2020 | 22 January 2020 | Molecular |
| EN ISO 20186-3:2019 | 23 October 2019 | Molecular |
| EN ISO 20186-1:2019 | 27 March 2019 | Molecular |
| EN ISO 20186-2:2019 | 27 March 2019 | Molecular |
| EN ISO 15195:2019 | 6 February 2019 | Laboratory medicine - Requirements for the competence of calibration laboratories using References measurement procedures (ISO 15195:2018) |
| EN ISO 20166-3:2019 | 23 January 2019 | Molecular |
| EN ISO 20166-2:2018 | 19 December 2018 | Molecular |
| EN ISO 20166-1:2018 | 19 December 2018 | Molecular |
| EN ISO 20184-1:2018 | 19 December 2018 | Molecular |
| EN ISO 20184-2:2018 | 12 December 2018 | Molecular |
| EN ISO 6710:2017 | 6 September 2017 | Single-use containers for human venous blood specimen collection (ISO 6710:2017) |
| EN ISO 22870:2016 | 30 November 2016 | Point-of-care testing (POCT) - Requirements for quality and competence (ISO 22870:2016) |
| EN ISO 15197:2015 | 10 June 2015 |
|
| EN ISO 23640:2015 | 10 June 2015 |
|
| EN ISO 19001:2013 | 20 March 2013 |
|
| EN ISO 15189:2012 | 1 November 2012 | Medical laboratories - Requirements for quality and competence (ISO 15189:2012, Corrected version 2014-08-15) |
| EN ISO 18113-5:2011 | 19 October 2011 |
|
| EN ISO 18113-2:2011 | 19 October 2011 |
|
| EN ISO 18113-3:2011 | 19 October 2011 |
|
| EN ISO 18113-4:2011 | 19 October 2011 |
|
| EN ISO 18113-1:2011 | 19 October 2011 |
|
| EN ISO 15193:2009 | 1 May 2009 |
|
| EN ISO 15194:2009 | 1 May 2009 |
|
| EN 14136:2004 | 19 May 2004 | Use of external quality assessment schemes in the assessment of the performance of |
| EN ISO 18153:2003 | 15 August 2003 |
|
| EN 13975:2003 | 19 March 2003 | Sampling procedures used for acceptance testing of |
| EN 13612:2002/AC:2002 | 18 December 2002 | Performance evaluation of |
| EN 13641:2002 | 8 May 2002 | Elimination or reduction of risk of infection related to |
| EN 13532:2002 | 17 April 2002 | General requirements for |
| EN 13612:2002 | 20 March 2002 | Performance evaluation of |
| EN 12322:1999/A1:2001 | 24 October 2001 |
|
| EN 12322:1999 | 21 April 1999 |
|
| EN 1659:1996 | 20 November 1996 |
|