Literature DB >> 30304689

The 10,000 Immunomes Project: Building a Resource for Human Immunology.

Kelly A Zalocusky1, Matthew J Kan1, Zicheng Hu1, Patrick Dunn2, Elizabeth Thomson2, Jeffrey Wiser2, Sanchita Bhattacharya1, Atul J Butte3.   

Abstract

There is increasing appreciation that the immune system plays critical roles not only in the traditional domains of infection and inflammation but also in many areas of biology, including tumorigenesis, metabolism, and even neurobiology. However, one of the major barriers for understanding human immunological mechanisms is that immune assays have not been reproducibly characterized for a sufficiently large and diverse healthy human cohort. Here, we present the 10,000 Immunomes Project (10KIP), a framework for growing a diverse human immunology reference, from ImmPort, a publicly available resource of subject-level immunology data. Although some measurement types are sparse in the presently deposited ImmPort database, the extant data allow for a diversity of robust comparisons. Using 10KIP, we describe variations in serum cytokines and leukocytes by age, race, and sex; define a baseline cell-cytokine network; and describe immunologic changes in pregnancy. All data in the resource are available for visualization and download at http://10kimmunomes.org/.
Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Year:  2018        PMID: 30304689      PMCID: PMC6263160          DOI: 10.1016/j.celrep.2018.09.021

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  57 in total

1.  Changes of serum leptin and endocrine and metabolic parameters after 7 days of energy restriction in men and women.

Authors:  G R Dubuc; S D Phinney; J S Stern; P J Havel
Journal:  Metabolism       Date:  1998-04       Impact factor: 8.694

Review 2.  Cytokine networks in neuroinflammation.

Authors:  Burkhard Becher; Sabine Spath; Joan Goverman
Journal:  Nat Rev Immunol       Date:  2016-12-05       Impact factor: 53.106

3.  Racial differences in physiologic parameters related to asthma among middle-class children.

Authors:  C L Joseph; D R Ownby; E L Peterson; C C Johnson
Journal:  Chest       Date:  2000-05       Impact factor: 9.410

Review 4.  Mass Cytometry: Single Cells, Many Features.

Authors:  Matthew H Spitzer; Garry P Nolan
Journal:  Cell       Date:  2016-05-05       Impact factor: 41.582

Review 5.  Tackling the widespread and critical impact of batch effects in high-throughput data.

Authors:  Jeffrey T Leek; Robert B Scharpf; Héctor Corrada Bravo; David Simcha; Benjamin Langmead; W Evan Johnson; Donald Geman; Keith Baggerly; Rafael A Irizarry
Journal:  Nat Rev Genet       Date:  2010-09-14       Impact factor: 53.242

6.  Biopsy neutrophilia, neutrophil chemokine and receptor gene expression in severe exacerbations of chronic obstructive pulmonary disease.

Authors:  Yusheng Qiu; Jie Zhu; Venkata Bandi; Robert L Atmar; Keith Hattotuwa; Kay K Guntupalli; Peter K Jeffery
Journal:  Am J Respir Crit Care Med       Date:  2003-07-11       Impact factor: 21.405

7.  Resistin promotes endothelial cell activation: further evidence of adipokine-endothelial interaction.

Authors:  Subodh Verma; Shu-Hong Li; Chao-Hung Wang; Paul W M Fedak; Ren-Ke Li; Richard D Weisel; Donald A G Mickle
Journal:  Circulation       Date:  2003-07-21       Impact factor: 29.690

8.  Race/ethnic difference in diabetes and diabetic complications.

Authors:  Elias K Spanakis; Sherita Hill Golden
Journal:  Curr Diab Rep       Date:  2013-12       Impact factor: 4.810

Review 9.  Cytometric bead array: a multiplexed assay platform with applications in various areas of biology.

Authors:  Edward Morgan; Rudi Varro; Homero Sepulveda; Julia A Ember; John Apgar; Jerry Wilson; Larry Lowe; Roy Chen; Lalita Shivraj; Anissa Agadir; Roberto Campos; David Ernst; Amitabh Gaur
Journal:  Clin Immunol       Date:  2004-03       Impact factor: 3.969

10.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

View more
  17 in total

1.  SIMON, an Automated Machine Learning System, Reveals Immune Signatures of Influenza Vaccine Responses.

Authors:  Adriana Tomic; Ivan Tomic; Yael Rosenberg-Hasson; Cornelia L Dekker; Holden T Maecker; Mark M Davis
Journal:  J Immunol       Date:  2019-06-14       Impact factor: 5.422

2.  An immune-related risk gene signature predicts the prognosis of breast cancer.

Authors:  Wenning Cao; Yike Jiang; Xiang Ji; Lan Ma
Journal:  Breast Cancer       Date:  2021-01-05       Impact factor: 4.239

3.  High frequency of shared clonotypes in human B cell receptor repertoires.

Authors:  Cinque Soto; Robin G Bombardi; Andre Branchizio; Nurgun Kose; Pranathi Matta; Alexander M Sevy; Robert S Sinkovits; Pavlo Gilchuk; Jessica A Finn; James E Crowe
Journal:  Nature       Date:  2019-02-13       Impact factor: 49.962

4.  The "Virtual Digital Twins" Concept in Precision Nutrition.

Authors:  Kalliopi Gkouskou; Ioannis Vlastos; Petros Karkalousos; Dimitrios Chaniotis; Despina Sanoudou; Aristides G Eliopoulos
Journal:  Adv Nutr       Date:  2020-11-16       Impact factor: 8.701

5.  Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC.

Authors:  Yang Hu; Yudai Xu; Lipeng Mao; Wen Lei; Jian Xiang; Lijuan Gao; Junxing Jiang; Li An Huang; Oscar Junhong Luo; Jinhai Duan; Guobing Chen
Journal:  Front Aging       Date:  2022-02-03

6.  Myalgic encephalomyelitis/chronic fatigue syndrome patients exhibit altered T cell metabolism and cytokine associations.

Authors:  Alexandra H Mandarano; Jessica Maya; Ludovic Giloteaux; Daniel L Peterson; Marco Maynard; C Gunnar Gottschalk; Maureen R Hanson
Journal:  J Clin Invest       Date:  2020-03-02       Impact factor: 14.808

7.  High-throughput phenotyping reveals expansive genetic and structural underpinnings of immune variation.

Authors:  Lucie Abeler-Dörner; Adam G Laing; Anna Lorenc; Dmitry S Ushakov; Simon Clare; Anneliese O Speak; Maria A Duque-Correa; Jacqueline K White; Ramiro Ramirez-Solis; Namita Saran; Katherine R Bull; Belén Morón; Jua Iwasaki; Philippa R Barton; Susana Caetano; Keng I Hng; Emma Cambridge; Simon Forman; Tanya L Crockford; Mark Griffiths; Leanne Kane; Katherine Harcourt; Cordelia Brandt; George Notley; Kolawole O Babalola; Jonathan Warren; Jeremy C Mason; Amrutha Meeniga; Natasha A Karp; David Melvin; Eleanor Cawthorne; Brian Weinrick; Albina Rahim; Sibyl Drissler; Justin Meskas; Alice Yue; Markus Lux; George X Song-Zhao; Anna Chan; Carmen Ballesteros Reviriego; Johannes Abeler; Heather Wilson; Agnieszka Przemska-Kosicka; Matthew Edmans; Natasha Strevens; Markus Pasztorek; Terrence F Meehan; Fiona Powrie; Ryan Brinkman; Gordon Dougan; William Jacobs; Clare M Lloyd; Richard J Cornall; Kevin J Maloy; Richard K Grencis; Gillian M Griffiths; David J Adams; Adrian C Hayday
Journal:  Nat Immunol       Date:  2019-12-16       Impact factor: 25.606

8.  Complex biological patterns of soluble cytokines and CD163 in childhood necessitating age-specific reference intervals for evidence-based clinical interpretation.

Authors:  Lusia Sepiashvili; Zaman Alli; Mary Kathryn Bohn; Alexandra Hall; Amir Karin; Kazunori Murata; Khosrow Adeli
Journal:  Clin Biochem       Date:  2021-09-09       Impact factor: 3.625

9.  Exploration of immune-related genes in high and low tumor mutation burden groups of chromophobe renal cell carcinoma.

Authors:  Lei Li; Xi Chen; Lu Hao; Qiuyan Chen; Haosheng Liu; Qing Zhou
Journal:  Biosci Rep       Date:  2020-07-31       Impact factor: 3.840

10.  Construction and Comprehensive Prognostic Analysis of a lncRNA-miRNA-mRNA Regulatory Network and Tumor Immune Cell Infiltration in Colorectal Cancer.

Authors:  Xiong Guo; Xiaolong Liang; Yujun Wang; Anqi Cheng; Chuan Qin; Han Zhang; Ziwei Wang
Journal:  Front Genet       Date:  2021-07-01       Impact factor: 4.599

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.