| Literature DB >> 30278775 |
Juraj Sokol1, Maria Skerenova2, Kamil Biringer3, Tomas Simurda1, Peter Kubisz1, Jan Stasko1.
Abstract
The aim of our study was to evaluate GP6 gene in patients with sticky platelet syndrome (SPS) and fetal loss. Platelet aggregability was tested with platelet-rich plasma using PACKS-4 aggregometer (Helena Laboratories). High-resolution melting analysis on LightCycler 480 II (Roche Diagnostics) was used for single-nucleotide polymorphism (SNP) genotyping. We examined 64 patients with SPS and 54 control participants. We found significantly higher occurrence of 5 SNPs in patients with SPS versus controls (rs1671152, rs1654433, rs1613662, rs1654416, and rs2304167). Moreover, the haplotype analysis showed a significantly higher occurrence of 7 haplotypes in patients with SPS compared to controls (acgg and aagg in GP6_5reg haplotype; ccgt in GP6_3reg haplotype; gg and ta in GP6_REG haplotype; SKTH and PEAN in GP6_PEAN haplotype). Our results, especially higher occurrence of 4 nonsynonymous variants within the coding region, support the idea that GP6 polymorphisms are associated with the platelet hyperaggregability accompanied by fetal loss.Entities:
Keywords: fetal loss; glycoprotein VI; hyperaggregability; single-nucleotide polymorphism
Mesh:
Substances:
Year: 2018 PMID: 30278775 PMCID: PMC6714835 DOI: 10.1177/1076029618802358
Source DB: PubMed Journal: Clin Appl Thromb Hemost ISSN: 1076-0296 Impact factor: 2.389
Platelet Aggregation Concentration and Values.
| Platelet Aggregation After Activation With | ||||||
|---|---|---|---|---|---|---|
| ADP | EPI | |||||
| Concentration, μM | 0.58 | 1.17 | 2.34 | 0.55 | 1.1 | 11.0 |
| Normal range, %a | 0.0-12.0 | 2.0-36.0 | 7.5-55.0 | 9.0-20.0 | 15.0-27.0 | 39.0-80.0 |
Abbreviations: ADP, adenosine diphosphate; EPI, epinephrine.
a Only informative, can be different for each laboratory.
Characteristics of the Selected SNPs.
| Ref SNP ID Number | Position on Chromosome 19 | Position Within GP6 Gene | SNP Sequence | Major/Minor Allele |
|---|---|---|---|---|
| rs1671152 | 55014977 | Exonic | CCCGT(G/T)TGATT | G/T |
| rs1671215 | 55041651 | 3′ regulatory region | TGTAA(A/C)TGTCA | A/C |
| rs12981732 | 55013007 | Intronic | GCAGC(C/T)GAGAA | C/T |
| rs4281840 | 55005440 | 5′ regulatory region | GGAAG(C/A)GTTTT | C/A |
| rs8113032 | 55042770 | Intronic | CGCAC(G/A)TGGTT | G/A |
| rs1654433 | 55038944 | 5′ regulatory region | AATTG(G/A)ACTG | G/A |
| rs10417943 | 55013969 | Exonic | TGAGA(G/A)GGGTG | G/A |
| rs10418743 | 55042000 | 5′ regulatory region | AGAAC(G/A)CTTCC | G/A |
| rs1654410 | 55013445 | 3′ regulatory region | TCTGT(C/T)TTCTG | C/T |
| rs11669150 | 55024604 | Intronic | TGAGA(T/C)GTTTG | T/C |
| rs1613662 | 55025227 | Exonic | TACCG(A/G)GGAAG | A/G |
| rs12610286 | 55030031 | Intronic | TTAAC(A/G)TATTT | A/G |
| rs1654431 | 55038390 | 5′ regulatory region | TAGCC(G/A)GCTCC | G/A |
| rs1654416 | 55018667 | Exonic | GACTT(T/C)GTTTGT | T/C |
| rs2304167 | 55015713 | Exonic | ACTGG(C/T)GGTGA | C/T |
Abbreviations: A, adenine; C, cytosine; G, guanine; SNP, single-nucleotide polymorphism, T, thymin.
The Gestation Week of Spontaneous Abortion.
| Patient Number | First Fetal Loss | Second Fetal Loss | Third Fetal Loss | Fourth Fetal Loss |
|---|---|---|---|---|
| 1 | 10 | 11 | 7 | - |
| 2 | 8 | 8 | 10 | - |
| 3 | 12 | 9 | - | - |
| 4 | 28 | 18 | - | - |
| 5 | 7 | 8 | - | - |
| 6 | 5 | 7 | - | - |
| 7 | 14 | - | - | - |
| 8 | 11 | - | - | - |
| 9 | 20 | 20 | - | - |
| 10 | 7 | 7 | 8 | - |
| 11 | 10 | 20 | - | - |
| 12 | 6 | 12 | - | - |
| 13 | 12 | 12 | 17 | - |
| 14 | 4 | 7 | 9 | - |
| 15 | 7 | 12 | - | - |
| 16 | 9 | 10 | - | - |
| 17 | 29 | - | - | - |
| 18 | 10 | 11 | - | - |
| 19 | 11 | - | - | - |
| 20 | 27 | - | - | - |
| 21 | 5 | 5 | - | - |
| 22 | 20 | 22 | - | - |
| 23 | 20 | 20 | - | - |
| 24 | 12 | 12 | 13 | - |
| 25 | 10 | 12 | - | - |
| 26 | 15 | 13 | - | - |
| 27 | 7 | 8 | 13 | - |
| 28 | 8 | 9 | - | - |
| 29 | 15 | 13 | - | - |
| 30 | 16 | 20 | - | - |
| 31 | 9 | 10 | 11 | 11 |
| 32 | 8 | 8 | - | - |
| 33 | 7 | 8 | - | - |
| 34 | 8 | 8 | - | - |
| 35 | 9 | 10 | - | - |
| 36 | 12 | 11 | - | - |
| 37 | 20 | - | - | - |
| 38 | 9 | 10 | 11 | - |
| 39 | 9 | - | - | - |
| 40 | 10 | 11 | - | - |
| 41 | 13 | - | - | - |
| 42 | 11 | 13 | 13 | - |
| 43 | 12 | 11 | - | - |
| 44 | 12 | - | - | - |
| 45 | 10 | 13 | - | - |
| 46 | 12 | 10 | 14 | - |
| 47 | 13 | 8 | - | - |
| 48 | 10 | 12 | - | - |
| 49 | 15 | 12 | 16 | - |
| 50 | 12 | 12 | - | - |
| 51 | 16 | 12 | - | - |
| 52 | 13 | 12 | - | - |
| 53 | 13 | 10 | 13 | - |
| 54 | 13 | 18 | - | - |
| 55 | 14 | 12 | - | - |
| 56 | 14 | - | - | - |
| 57 | 13 | 10 | - | - |
| 58 | 10 | 11 | - | - |
| 59 | 13 | 12 | - | - |
| 60 | 14 | 13 | - | - |
| 61 | 10 | 8 | - | - |
| 62 | 13 | - | - | - |
| 63 | 12 | 12 | - | - |
| 64 | 14 | 12 | - | - |
Frequency of Alleles of the GP6 Regulatory Regions SNP in Patients With SPS and Control Individuals.
| Ref SNP | Freq. (SPS) | Freq. (Control) | Fisher HWE | Fisher HWE | Fisher Exact | OR Minor Allele | 95% CI |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
|
|
| rs1671215 | 0.328 | 0.213 | .398 | 1.000 | .057 | 1.805 | 1.000-3.256 |
| rs12981732 | 0.227 | 0.250 | .492 | 1.000 | .759 | 0.879 | 0.481-1.602 |
| rs4281840 | 0.320 | 0.343 | .565 | .231 | .782 | 0.904 | 0.524-1.557 |
| rs8113032 | 0.422 | 0.472 | 1.000 | .411 | .511 | 0.816 | 0.487-1.365 |
|
|
|
|
|
|
|
|
|
| rs10417943 | 0.008 | 0.000 | 1.000 | 1.000 | 1.000 | - | - |
| rs10418743 | 0.125 | 0.130 | 1.000 | 1.000 | 1.000 | 0.959 | 0.445-2.067 |
| rs1654410 | 0.438 | 0.435 | .617 | .588 | 1.000 | 1.009 | 0.602-1.691 |
| rs11669150 | 0.222 | 0.269 | 1.000 | 1.000 | .447 | 0.778 | 0.428-1.415 |
|
|
|
|
|
|
|
|
|
| rs12610286 | 0.258 | 0.343 | 1.000 | .231 | .198 | 0.667 | 0.380-1.168 |
| rs1654431 | 0.500 | 0.444 | .802 | .789 | .434 | 1.250 | 0.747-2.089 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Abbreviations: CI, confidence interval, freq., frequency, HWE, Hardy-Weinberg equilibrium; OR, odds ratio; SNP, single-nucleotide polymorphism; SPS, sticky platelet syndrome.
Haplotype Frequencies in Patients With SPS and Control Individuals.a
| Haplotype | Frequency (SPS) | Frequency (Control) | OR | CI (95%) | ||
|---|---|---|---|---|---|---|
| GP6_H5 | TTAAA | 0.213 | 0.177 | .420 | 1.309 | 0.680 |
| CCAAG | 0.160 | 0.196 | .543 | 0.812 | 0.414 | |
| TTAGA | 0.143 | 0.215 | .178 | 0.628 | 0.318 | |
| TTAAG | 0.140 | 0.125 | .673 | 1.178 | 0.550 | |
| CTAGA | 0.086 | 0.091 | .943 | 0.968 | 0.391 | |
| CTGAG | 0.115 | 0.050 | .064 | 2.559 | 0.919 | |
| CCAAA | 0.036 | 0.058 | .442 | 0.617 | 0.178 | |
| TTGAG | 0.036 | 0.012 | .229 | 3.142 | 0.442 | |
| CTAAG | 0.014 | 0.025 | .543 | 0.553 | 0.080 | |
| TCAAA | 0.013 | 0.014 | .985 | 0.979 | 0.108 | |
| TTAGG | 0.004 | 0.021 | .251 | 0.199 | 0.009 | |
| CTAGG | 0.009 | 0.014 | .747 | 0.672 | 0.060 | |
| GP6_5reg | gaga | 0.378 | 0.440 | .336 | 0.774 | 0.460 |
| gagg | 0.149 | 0.223 | .147 | 0.613 | 0.315 | |
| gcgg | 0.152 | 0.171 | .696 | 0.871 | 0.435 | |
| gaag | 0.099 | 0.097 | .969 | 1.017 | 0.430 | |
|
|
|
|
|
|
| |
|
|
|
|
|
|
| |
| gaaa | 0.007 | 0.028 | .204 | 0.237 | 0.021 | |
| gcaa | 0.019 | 0.004 | .295 | 4.817 | 0.188 | |
| acga | 0.018 | 0.001 | .188 | 20.743 | 0.033 | |
| GP6_3reg | ccgg | 0.445 | 0.541 | .159 | 0.691 | 0.413 |
| atgg | 0.174 | 0.172 | .949 | 1.023 | 0.520 | |
| acgg | 0.146 | 0.170 | .629 | 0.841 | 0.417 | |
|
|
|
|
|
|
| |
| ctgg | 0.032 | 0.071 | .175 | 0.435 | 0.127 | |
| ctgt | 0.021 | 0.007 | .382 | 2.967 | 0.230 | |
| GP6_REG |
|
|
|
|
|
|
|
|
|
|
|
|
| |
| tg | 0.025 | 0.037 | .576 | 0.654 | 0.146 | |
| ga | 0.017 | 0.028 | .562 | 0.595 | 0.101 | |
| GP6_PEAN |
|
|
|
|
|
|
|
|
|
|
|
|
| |
| SKTN | 0.023 | 0.000 | .111 | - | - | |
Abbreviations: SNP, single-nucleotide polymorphism, SPS, sticky platelet syndrome.
aGP6_H5 haplotype (rs1654410, rs11669150, rs1613662, rs12610286, and rs1654431), GP6_5reg haplotype (rs1654433, rs1671215, rs10418743, and rs8113032), GP6_3reg haplotype (rs4281840, rs12981732, and rs1671152), GP6_REG haplotype (rs1671152 and rs1654433), and GP6_PEAN haplotype (rs1671152, rs2304167, rs1654416, and rs1613662).