Literature DB >> 30272679

Efficient C-to-T base editing in plants using a fusion of nCas9 and human APOBEC3A.

Yuan Zong1,2, Qianna Song1,2, Chao Li1,2, Shuai Jin1,2, Dingbo Zhang1,2, Yanpeng Wang1, Jin-Long Qiu3, Caixia Gao1,2.   

Abstract

Base editors (BEs) have been used to create C-to-T substitutions in various organisms. However, editing with rat APOBEC1-based BE3 is limited to a 5-nt sequence editing window and is inefficient in GC contexts. Here, we show that a base editor fusion protein composed of Cas9 nickase and human APOBEC3A (A3A-PBE) converts cytidine to thymidine efficiently in wheat, rice and potato with a 17-nucleotide editing window at all examined sites, independent of sequence context.

Entities:  

Year:  2018        PMID: 30272679     DOI: 10.1038/nbt.4261

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  28 in total

1.  Targeted genome modification of crop plants using a CRISPR-Cas system.

Authors:  Qiwei Shan; Yanpeng Wang; Jun Li; Yi Zhang; Kunling Chen; Zhen Liang; Kang Zhang; Jinxing Liu; Jianzhong Jeff Xi; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2013-08       Impact factor: 54.908

Review 2.  Evolution in action: plants resistant to herbicides.

Authors:  Stephen B Powles; Qin Yu
Journal:  Annu Rev Plant Biol       Date:  2010       Impact factor: 26.379

3.  Rapid and efficient gene modification in rice and Brachypodium using TALENs.

Authors:  Qiwei Shan; Yanpeng Wang; Kunling Chen; Zhen Liang; Jun Li; Yi Zhang; Kang Zhang; Jinxing Liu; Daniel F Voytas; Xuelian Zheng; Yong Zhang; Caixia Gao
Journal:  Mol Plant       Date:  2013-01-02       Impact factor: 13.164

4.  Highly efficient RNA-guided base editing in mouse embryos.

Authors:  Kyoungmi Kim; Seuk-Min Ryu; Sang-Tae Kim; Gayoung Baek; Daesik Kim; Kayeong Lim; Eugene Chung; Sunghyun Kim; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2017-02-27       Impact factor: 54.908

5.  MATRILINEAL, a sperm-specific phospholipase, triggers maize haploid induction.

Authors:  Timothy Kelliher; Dakota Starr; Lee Richbourg; Satya Chintamanani; Brent Delzer; Michael L Nuccio; Julie Green; Zhongying Chen; Jamie McCuiston; Wenling Wang; Tara Liebler; Paul Bullock; Barry Martin
Journal:  Nature       Date:  2017-01-23       Impact factor: 49.962

6.  Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia.

Authors:  Nestor Kippes; Juan M Debernardi; Hans A Vasquez-Gross; Bala A Akpinar; Hikment Budak; Kenji Kato; Shiaoman Chao; Eduard Akhunov; Jorge Dubcovsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

7.  Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew.

Authors:  Yanpeng Wang; Xi Cheng; Qiwei Shan; Yi Zhang; Jinxing Liu; Caixia Gao; Jin-Long Qiu
Journal:  Nat Biotechnol       Date:  2014-07-20       Impact factor: 54.908

8.  Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes.

Authors:  Zhen Liang; Kunling Chen; Tingdong Li; Yi Zhang; Yanpeng Wang; Qian Zhao; Jinxing Liu; Huawei Zhang; Cuimin Liu; Yidong Ran; Caixia Gao
Journal:  Nat Commun       Date:  2017-01-18       Impact factor: 14.919

9.  Precision genome engineering and agriculture: opportunities and regulatory challenges.

Authors:  Daniel F Voytas; Caixia Gao
Journal:  PLoS Biol       Date:  2014-06-10       Impact factor: 8.029

10.  A fluorescent reporter for quantification and enrichment of DNA editing by APOBEC-Cas9 or cleavage by Cas9 in living cells.

Authors:  Amber St Martin; Daniel Salamango; Artur Serebrenik; Nadine Shaban; William L Brown; Francesco Donati; Uday Munagala; Silvestro G Conticello; Reuben S Harris
Journal:  Nucleic Acids Res       Date:  2018-08-21       Impact factor: 16.971

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  65 in total

Review 1.  Single-nucleotide editing: From principle, optimization to application.

Authors:  Jinling Tang; Trevor Lee; Tao Sun
Journal:  Hum Mutat       Date:  2019-09-15       Impact factor: 4.878

Review 2.  Genome Editing with mRNA Encoding ZFN, TALEN, and Cas9.

Authors:  Hong-Xia Zhang; Ying Zhang; Hao Yin
Journal:  Mol Ther       Date:  2019-01-25       Impact factor: 11.454

3.  APOBEC3A Loop 1 Is a Determinant for Single-Stranded DNA Binding and Deamination.

Authors:  Samantha J Ziegler; Yingxia Hu; Swapnil C Devarkar; Yong Xiong
Journal:  Biochemistry       Date:  2019-09-03       Impact factor: 3.162

Review 4.  Base Editors: Modular Tools for the Introduction of Point Mutations in Living Cells.

Authors:  Mallory Evanoff; Alexis C Komor
Journal:  Emerg Top Life Sci       Date:  2019-09-10

Review 5.  Gene editing: an instrument for practical application of gene biology to plant breeding.

Authors:  Yuan-Yuan Tan; Hao Du; Xia Wu; Yan-Hua Liu; Meng Jiang; Shi-Yong Song; Liang Wu; Qing-Yao Shu
Journal:  J Zhejiang Univ Sci B       Date:  2020-06       Impact factor: 3.066

6.  Breeding crops by design for future agriculture.

Authors:  Chengdao Li
Journal:  J Zhejiang Univ Sci B       Date:  2020-06       Impact factor: 3.066

Review 7.  Applications of genome editing technology in the targeted therapy of human diseases: mechanisms, advances and prospects.

Authors:  Hongyi Li; Yang Yang; Weiqi Hong; Mengyuan Huang; Min Wu; Xia Zhao
Journal:  Signal Transduct Target Ther       Date:  2020-01-03

8.  Expanded targeting scope and enhanced base editing efficiency in rabbit using optimized xCas9(3.7).

Authors:  Zhiquan Liu; Mao Chen; Huanhuan Shan; Siyu Chen; Yuxin Xu; Yuning Song; Quanjun Zhang; Hongming Yuan; Hongsheng Ouyang; Zhanjun Li; Liangxue Lai
Journal:  Cell Mol Life Sci       Date:  2019-04-27       Impact factor: 9.261

Review 9.  The next generation of CRISPR-Cas technologies and applications.

Authors:  Adrian Pickar-Oliver; Charles A Gersbach
Journal:  Nat Rev Mol Cell Biol       Date:  2019-08       Impact factor: 94.444

10.  Application of Cas12a and nCas9-activation-induced cytidine deaminase for genome editing and as a non-sexual strategy to generate homozygous/multiplex edited plants in the allotetraploid genome of tobacco.

Authors:  Chen-Tran Hsu; Yu-Jung Cheng; Yu-Hsua Yuan; Wei-Fon Hung; Qiao-Wei Cheng; Fu-Hui Wu; Lan-Ying Lee; Stanton B Gelvin; Choun-Sea Lin
Journal:  Plant Mol Biol       Date:  2019-08-10       Impact factor: 4.076

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