Literature DB >> 31030226

Expanded targeting scope and enhanced base editing efficiency in rabbit using optimized xCas9(3.7).

Zhiquan Liu1, Mao Chen1, Huanhuan Shan1, Siyu Chen1, Yuxin Xu1, Yuning Song1, Quanjun Zhang2, Hongming Yuan1, Hongsheng Ouyang1, Zhanjun Li3, Liangxue Lai4,5,6,7.   

Abstract

Evolved xCas9(3.7) variant with broad PAM compatibility has been reported in cell lines, while its editing efficiency was site-specific. Here, we show that xCas9(3.7) can recognize a broad PAMs including NGG, NGA, and NGT, in both embryos and Founder (F0) rabbits. Furthermore, the codon-optimized xCas9-derived base editors, exBE4 and exABE, can dramatically improve the base editing efficiencies in rabbit embryos. Our results demonstrated that the optimized xCas9 with expanded PAM compatibility and enhanced base editing efficiency could be used for precise gene modifications in organisms.

Entities:  

Keywords:  Base editors; CRISPR; PAM compatibility; xCas9

Mesh:

Substances:

Year:  2019        PMID: 31030226     DOI: 10.1007/s00018-019-03110-8

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  33 in total

Review 1.  The tyrosinase gene and oculocutaneous albinism type 1 (OCA1): A model for understanding the molecular biology of melanin formation.

Authors:  W S Oetting
Journal:  Pigment Cell Res       Date:  2000-10

Review 2.  Molecular basis of albinism: mutations and polymorphisms of pigmentation genes associated with albinism.

Authors:  W S Oetting; R A King
Journal:  Hum Mutat       Date:  1999       Impact factor: 4.878

3.  Highly Efficient A·T to G·C Base Editing by Cas9n-Guided tRNA Adenosine Deaminase in Rice.

Authors:  Fang Yan; Yongjie Kuang; Bin Ren; Jingwen Wang; Dawei Zhang; Honghui Lin; Bing Yang; Xueping Zhou; Huanbin Zhou
Journal:  Mol Plant       Date:  2018-02-22       Impact factor: 13.164

4.  Segregation of a missense mutation in the amyloid precursor protein gene with familial Alzheimer's disease.

Authors:  A Goate; M C Chartier-Harlin; M Mullan; J Brown; F Crawford; L Fidani; L Giuffra; A Haynes; N Irving; L James
Journal:  Nature       Date:  1991-02-21       Impact factor: 49.962

5.  Efficient dual sgRNA-directed large gene deletion in rabbit with CRISPR/Cas9 system.

Authors:  Yuning Song; Lin Yuan; Yong Wang; Mao Chen; Jichao Deng; Qingyan Lv; Tingting Sui; Zhanjun Li; Liangxue Lai
Journal:  Cell Mol Life Sci       Date:  2016-01-27       Impact factor: 9.261

6.  Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T:A base editors with higher efficiency and product purity.

Authors:  Alexis C Komor; Kevin T Zhao; Michael S Packer; Nicole M Gaudelli; Amanda L Waterbury; Luke W Koblan; Y Bill Kim; Ahmed H Badran; David R Liu
Journal:  Sci Adv       Date:  2017-08-30       Impact factor: 14.136

7.  Programmable base editing of zebrafish genome using a modified CRISPR-Cas9 system.

Authors:  Yihan Zhang; Wei Qin; Xiaochan Lu; Jason Xu; Haigen Huang; Haipeng Bai; Song Li; Shuo Lin
Journal:  Nat Commun       Date:  2017-07-25       Impact factor: 14.919

8.  Improving cytidine and adenine base editors by expression optimization and ancestral reconstruction.

Authors:  Luke W Koblan; Jordan L Doman; Christopher Wilson; Jonathan M Levy; Tristan Tay; Gregory A Newby; Juan Pablo Maianti; Aditya Raguram; David R Liu
Journal:  Nat Biotechnol       Date:  2018-05-29       Impact factor: 54.908

Review 9.  CRISPR-Cas guides the future of genetic engineering.

Authors:  Gavin J Knott; Jennifer A Doudna
Journal:  Science       Date:  2018-08-31       Impact factor: 47.728

10.  Optimized base editors enable efficient editing in cells, organoids and mice.

Authors:  Maria Paz Zafra; Emma M Schatoff; Alyna Katti; Miguel Foronda; Marco Breinig; Anabel Y Schweitzer; Amber Simon; Teng Han; Sukanya Goswami; Emma Montgomery; Jordana Thibado; Edward R Kastenhuber; Francisco J Sánchez-Rivera; Junwei Shi; Christopher R Vakoc; Scott W Lowe; Darjus F Tschaharganeh; Lukas E Dow
Journal:  Nat Biotechnol       Date:  2018-07-03       Impact factor: 54.908

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  2 in total

Review 1.  Modeling Psychiatric Disorder Biology with Stem Cells.

Authors:  Debamitra Das; Kyra Feuer; Marah Wahbeh; Dimitrios Avramopoulos
Journal:  Curr Psychiatry Rep       Date:  2020-04-21       Impact factor: 5.285

Review 2.  CRISPR base editing applications for identifying cancer-driving mutations.

Authors:  Martin Pal; Marco J Herold
Journal:  Biochem Soc Trans       Date:  2021-02-26       Impact factor: 5.407

  2 in total

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