| Literature DB >> 30234019 |
Wenjie Liang1,2, Lei Xu3,4, Pengfei Yang3,4, Lele Zhang2,5,6, Dalong Wan2, Qiang Huang1, Tianye Niu3, Feng Chen1.
Abstract
Introduction: The emerging field of "radiomics" has considerable potential in disease diagnosis, pathologic grading, prognosis evaluation, and prediction of treatment response. We aimed to develop a novel radiomics nomogram based on radiomics features and clinical characteristics that could preoperatively predict early recurrence (ER) of intrahepatic cholangiocarcinoma (ICC) after partial hepatectomy.Entities:
Keywords: MRI; intrahepatic cholangiocarcinoma; machine learning; radiomics; recurrence
Year: 2018 PMID: 30234019 PMCID: PMC6131601 DOI: 10.3389/fonc.2018.00360
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Figure 1Arterial-phase contrast-enhanced MRI images of two patients with ICC. The tumor was identified, and the region of interest (ROI) placed (red line) on the images. (A,B) The primary image and the ROI (red line) marked image for one patient developed early recurrence. (C,D) The primary image and the ROI marked (red line) image for the other patient did not develop early recurrence.
Figure 2The radiomics workflow and study workflow.
Clinical factors and radiomics score of the ER and Non-ER groups in two cohort.
| Age (years) | 58.88 ± 9.14 | 60.57 ± 9.85 | 0.3042 | 59.69 ± 11.24 | 59.73 ± 8.32 | 0.6082 |
| Gender (male: female) | 51:34 | 34:20 | 0.7286 | 32:16 | 14:8 | 0.8076 |
| Location (left: right) | 49:36 | 29:25 | 0.6518 | 29:19 | 8:14 | 0.6512 |
| Multiple (no: yes) | 67:18 | 49:5 | 0.0682 | 34:14 | 19:3 | 0.1265 |
| Maximum diameter (cm) | 6.23 ± 2.63 | 4.54 ± 2.10 | 0.0001 | 6.22 ± 2.23 | 4.09 ± 2.00 | 0.0003 |
| Hepatitis (no: yes) | 64:21 | 34:20 | 0.1325 | 33:15 | 12:10 | 0.2740 |
| Cirrhosis (no: yes) | 76:9 | 50:4 | 0.5336 | 44:4 | 20:2 | 0.9196 |
| Cholelithiasis (no: yes) | 67:18 | 46:8 | 0.3521 | 38:10 | 20:2 | 0.1792 |
| AST (normal: abnormal) | 72:13 | 52:2 | 0.0109 | 37:11 | 22:0 | 0.0113 |
| ALT (normal: abnormal) | 68:17 | 48:6 | 0.0350 | 33:15 | 21:1 | 0.0140 |
| CA19-9 (normal: abnormal) | 27:58 | 36:18 | 0.0013 | 20:28 | 12:10 | 0.0008 |
| CEA (normal: abnormal) | 62:23 | 51:3 | 0.0099 | 27:21 | 18:4 | 0.0047 |
| Clinical stage (I/II: III/IV) | 33:52 | 46:8 | <0.0001 | 14:34 | 20:2 | <0.0001 |
| Radiomics score | 0.76 ± 0.58 | 0.09 ± 0.47 | < 0.0001 | 0.78 ± 0.59 | 0.20 ± 0.60 | 0.0023 |
Individual pre-operative clinical factors are analyzed for significant differences using non-parametric test.
P < 0.05 indicates a significant difference. Maximum diameter, Age and Radiomics score are represented as [mean ± standard deviation]. ER, early recurrence; Non-ER, non-early recurrence; AST, serum aspartate transaminase; ALT, serum alanine transaminase; CA19-9, serum carbohydrate antigen 19-9; CEA, serum carcinoembryonic antigen.
Figure 3Selection of radiomics features using the LASSO logistic regression algorithm. (A) The penalization coefficient λ in the LASSO model was tuned using tenfold cross-validation and the minimum criterion. AUC metrics (y-axis) were plotted against log(λ) (bottom x-axis). The top x-axis indicates the number of predictors for the given log(λ). Red dots indicate average AUC for each model at the given λ, and vertical bars through the red dots show the upper and lower values of the AUC according to the tenfold cross-validation. The vertical black lines define the optimal λ (i.e., where the model provides its best fit to the data). As a result, an optimal λ of 0.0605, with log(λ) = −2.81, was selected. (B) LASSO coefficient profiles of the 98 radiomics features. The vertical line was plotted at the given λ, selected by tenfold cross-validation. For the optimal λ, nine features with a non-zero coefficient were selected. ROC curves of the radiomics signature for (C) training cohort, (D) internal validation cohort, and (E) independent validation cohort.
Figure 4(A) Radiomics nomogram combining the radiomics score and clinical stage developed by the training cohort. Performance of the nomogram was assessed by ROC curves and calibration curves in the (B,E) training cohort, (C,F) internal validation cohort, and (D,G) independent validation cohort. Calibration curves describe the calibration of the nomogram with respect to agreement between the predicted risk (x-axis) and real risk (y-axis) of ER. The 45-degree black line represents the “ideal” prediction. The blue line represents the performance of the radiomics nomogram. The blue line closer to the ideal prediction has a higher predictive accuracy of the nomogram.
Predictive performance of radiomics signature and nomogram.
| Training cohort | 0.78 | 0.76 | 0.82 (0.74–0.88) | 0.74 | 0.89 | 0.90 (0.83–0.94) |
| Internal validation | 0.78 | 0.63 | 0.75 (0.68–0.81) | 0.89 | 0.64 | 0.84 (0.78–0.89) |
| Independent validation | 0.94 | 0.50 | 0.77 (0.65–0.86) | 0.81 | 0.82 | 0.86 (0.76–0.93) |
AUC, area under ROC curve; CI, confidence interval.
Figure 5DCA for the radiomics signature and radiomics nomogram in the (A) internal validation cohort and (B) independent validation cohort. The y-axis represents the net benefit, whereas the x-axis represents the threshold probability. Blue line: radiomics nomogram; red line: radiomics signature; black line: hypothesis that all patients have ER; gray line: hypothesis that no patients have ER.