Literature DB >> 29633962

Computation of reliable textural indices from multimodal brain MRI: suggestions based on a study of patients with diffuse intrinsic pontine glioma.

Jessica Goya-Outi1, Fanny Orlhac, Raphael Calmon, Agusti Alentorn, Christophe Nioche, Cathy Philippe, Stéphanie Puget, Nathalie Boddaert, Irène Buvat, Jacques Grill, Vincent Frouin, Frederique Frouin.   

Abstract

Few methodological studies regarding widely used textural indices robustness in MRI have been reported. In this context, this study aims to propose some rules to compute reliable textural indices from multimodal 3D brain MRI. Diagnosis and post-biopsy MR scans including T1, post-contrast T1, T2 and FLAIR images from thirty children with diffuse intrinsic pontine glioma (DIPG) were considered. The hybrid white stripe method was adapted to standardize MR intensities. Sixty textural indices were then computed for each modality in different regions of interest (ROI), including tumor and white matter (WM). Three types of intensity binning were compared [Formula: see text]: constant bin width and relative bounds; [Formula: see text] constant number of bins and relative bounds; [Formula: see text] constant number of bins and absolute bounds. The impact of the volume of the region was also tested within the WM. First, the mean Hellinger distance between patient-based intensity distributions decreased by a factor greater than 10 in WM and greater than 2.5 in gray matter after standardization. Regarding the binning strategy, the ranking of patients was highly correlated for 188/240 features when comparing [Formula: see text] with [Formula: see text], but for only 20 when comparing [Formula: see text] with [Formula: see text], and nine when comparing [Formula: see text] with [Formula: see text]. Furthermore, when using [Formula: see text] or [Formula: see text] texture indices reflected tumor heterogeneity as assessed visually by experts. Last, 41 features presented statistically significant differences between contralateral WM regions when ROI size slightly varies across patients, and none when using ROI of the same size. For regions with similar size, 224 features were significantly different between WM and tumor. Valuable information from texture indices can be biased by methodological choices. Recommendations are to standardize intensities in MR brain volumes, to use intensity binning with constant bin width, and to define regions with the same volumes to get reliable textural indices.

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Year:  2018        PMID: 29633962     DOI: 10.1088/1361-6560/aabd21

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   3.609


  10 in total

1.  MR Imaging Correlates for Molecular and Mutational Analyses in Children with Diffuse Intrinsic Pontine Glioma.

Authors:  C Jaimes; S Vajapeyam; D Brown; P-C Kao; C Ma; L Greenspan; N Gupta; L Goumnerova; P Bandopahayay; F Dubois; N F Greenwald; T Zack; O Shapira; R Beroukhim; K L Ligon; S Chi; M W Kieran; K D Wright; T Y Poussaint
Journal:  AJNR Am J Neuroradiol       Date:  2020-05-07       Impact factor: 3.825

2.  A radiomics pipeline dedicated to Breast MRI: validation on a multi-scanner phantom study.

Authors:  Marie-Judith Saint Martin; Fanny Orlhac; Pia Akl; Fahad Khalid; Christophe Nioche; Irène Buvat; Caroline Malhaire; Frédérique Frouin
Journal:  MAGMA       Date:  2020-11-12       Impact factor: 2.310

3.  Standardization of brain MR images across machines and protocols: bridging the gap for MRI-based radiomics.

Authors:  Alexandre Carré; Guillaume Klausner; Myriam Edjlali; Marvin Lerousseau; Jade Briend-Diop; Roger Sun; Samy Ammari; Sylvain Reuzé; Emilie Alvarez Andres; Théo Estienne; Stéphane Niyoteka; Enzo Battistella; Maria Vakalopoulou; Frédéric Dhermain; Nikos Paragios; Eric Deutsch; Catherine Oppenheim; Johan Pallud; Charlotte Robert
Journal:  Sci Rep       Date:  2020-07-23       Impact factor: 4.379

4.  Novel Nomogram for Preoperative Prediction of Early Recurrence in Intrahepatic Cholangiocarcinoma.

Authors:  Wenjie Liang; Lei Xu; Pengfei Yang; Lele Zhang; Dalong Wan; Qiang Huang; Tianye Niu; Feng Chen
Journal:  Front Oncol       Date:  2018-09-04       Impact factor: 6.244

5.  Gray-level discretization impacts reproducible MRI radiomics texture features.

Authors:  Loïc Duron; Daniel Balvay; Saskia Vande Perre; Afef Bouchouicha; Julien Savatovsky; Jean-Claude Sadik; Isabelle Thomassin-Naggara; Laure Fournier; Augustin Lecler
Journal:  PLoS One       Date:  2019-03-07       Impact factor: 3.240

6.  Prediction of outcome in anal squamous cell carcinoma using radiomic feature analysis of pre-treatment FDG PET-CT.

Authors:  P J Brown; J Zhong; R Frood; S Currie; A Gilbert; A L Appelt; D Sebag-Montefiore; A Scarsbrook
Journal:  Eur J Nucl Med Mol Imaging       Date:  2019-09-04       Impact factor: 9.236

7.  Precise enhancement quantification in post-operative MRI as an indicator of residual tumor impact is associated with survival in patients with glioblastoma.

Authors:  Alonso Garcia-Ruiz; Pablo Naval-Baudin; Marta Ligero; Albert Pons-Escoda; Jordi Bruna; Gerard Plans; Nahum Calvo; Monica Cos; Carles Majós; Raquel Perez-Lopez
Journal:  Sci Rep       Date:  2021-01-12       Impact factor: 4.379

8.  A pilot radiogenomic study of DIPG reveals distinct subgroups with unique clinical trajectories and therapeutic targets.

Authors:  Xiaoting Zhu; Margot A Lazow; Austin Schafer; Allison Bartlett; Shiva Senthil Kumar; Deepak Kumar Mishra; Phillip Dexheimer; Mariko DeWire; Christine Fuller; James L Leach; Maryam Fouladi; Rachid Drissi
Journal:  Acta Neuropathol Commun       Date:  2021-01-11       Impact factor: 7.801

9.  Differentiating solitary brain metastases from glioblastoma by radiomics features derived from MRI and 18F-FDG-PET and the combined application of multiple models.

Authors:  Xu Cao; Duo Tan; Zhi Liu; Meng Liao; Yubo Kan; Rui Yao; Liqiang Zhang; Lisha Nie; Ruikun Liao; Shanxiong Chen; Mingguo Xie
Journal:  Sci Rep       Date:  2022-04-06       Impact factor: 4.379

10.  Correction for Magnetic Field Inhomogeneities and Normalization of Voxel Values Are Needed to Better Reveal the Potential of MR Radiomic Features in Lung Cancer.

Authors:  Maxime Lacroix; Frédérique Frouin; Anne-Sophie Dirand; Christophe Nioche; Fanny Orlhac; Jean-François Bernaudin; Pierre-Yves Brillet; Irène Buvat
Journal:  Front Oncol       Date:  2020-01-31       Impact factor: 6.244

  10 in total

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