| Literature DB >> 30225106 |
Ignacio Chi-Duran1, Javier Enriquez1, Andres Vega2, Felipe Herrera1,3, Dinesh Pratap Singh1,3.
Abstract
Hexa-aqua-zinc(II) dinitrate 5-(Entities:
Keywords: crystal stryucture; hexaaquazinc(II) complex; hydrogen-bonding; pyridin-3-yltetrazole; π–π stacking
Year: 2018 PMID: 30225106 PMCID: PMC6127703 DOI: 10.1107/S205698901801112X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the asymmetric unit (plus the three water molecules of the hexaaquazinc cation generated by symmetry), showing the atom labelling and displacement ellipsoids drawn at the 50% probability level. [Symmetry code: (i) −x, 2 − y, 2 − z.]
Selected geometric parameters (Å, °)
| Zn1—O3 | 2.0353 (11) | Zn1—O2i | 2.1011 (12) |
| Zn1—O3i | 2.0354 (11) | Zn1—O1i | 2.1841 (11) |
| Zn1—O2 | 2.1011 (12) | Zn1—O1 | 2.1841 (11) |
| O3—Zn1—O2 | 90.01 (5) | O2—Zn1—O1i | 92.10 (5) |
| O3—Zn1—O2i | 89.99 (5) | O3—Zn1—O1 | 89.47 (4) |
| O3—Zn1—O1i | 90.53 (4) | O2—Zn1—O1 | 87.90 (5) |
Symmetry code: (i) .
Figure 2Partial crystal packing of the title compound, showing the hydrogen-bonding interactions between [Zn(H2O)6]2+ and the tetrazolide ring. [Symmetry codes: (ii) −x + 1, −y + 1, −z + 1; (iii) −x + 1, −y + 2, −z + 1; (x) x, y − 1, z − 1; (xi) x + 1, y, z − 1.]
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.85 | 1.96 | 2.8067 (17) | 172 |
| O1—H2 | 0.85 | 1.96 | 2.8029 (17) | 173 |
| O2—H3 | 0.85 | 2.02 | 2.8589 (17) | 170 |
| O2—H4 | 0.85 | 2.08 | 2.9228 (17) | 171 |
| O3—H5 | 0.85 | 1.91 | 2.7446 (17) | 168 |
| O3—H6 | 0.85 | 2.72 | 3.4294 (17) | 142 |
| O3—H6 | 0.85 | 1.97 | 2.8076 (17) | 169 |
| N5—H5 | 0.82 | 2.61 | 3.344 (2) | 149 |
| N5—H5 | 0.82 | 1.92 | 2.7384 (18) | 173 |
| N5—H5 | 0.82 | 2.62 | 3.1347 (19) | 123 |
| C4—H4⋯O5viii | 0.93 | 2.65 | 3.452 (2) | 145 |
| C5—H5⋯O4ix | 0.93 | 2.52 | 3.292 (2) | 141 |
| C5—H5⋯O6ix | 0.93 | 2.52 | 3.422 (3) | 165 |
| C6—H6⋯O5vii | 0.93 | 2.41 | 3.047 (2) | 126 |
Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) ; (ix) .
Figure 3The crystal packing of the title compound, viewed along the [100] direction, showing O—H⋯N and N—H⋯O interactions (cyan lines).
π–π stacking interaction lengths (Å)
Cg1 and Cg2 are the centroids of the C1/N1/N2/N3/N4 and C2–C6/N5 rings, respectively.
| Centroid–centroid | Distance | Tetrazolide interplane distance |
|---|---|---|
|
| 3.6298 (6) | 3.23 (1) |
|
| 3.6120 (5) | 3.10 (3) |
Symmetry codes: (ii) −x + 1, −y + 1, −1 + z; (vii) x − 1, y, z.
Figure 4Partial crystal packing, showing π–π interactions between tetrazole and pyridinium rings, with d 1 = 3.6298 (6) Å and d 2 = 3.6120 (5) Å. [Symmetry codes: (ii) −x + 1, −y + 1, −1 + z; (vii) x − 1, y, z.]
Experimental details
| Crystal data | |
| Chemical formula | [Zn(H2O)6](NO3)2·2C6H5N5 |
|
| 591.81 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 293 |
|
| 5.6582 (11), 8.4632 (16), 12.046 (2) |
| α, β, γ (°) | 97.209 (2), 91.123 (2), 93.949 (2) |
|
| 570.67 (19) |
|
| 1 |
| Radiation type | Mo |
| μ (mm−1) | 1.16 |
| Crystal size (mm) | 0.49 × 0.21 × 0.09 |
| Data collection | |
| Diffractometer | Bruker SMART CCD area detector |
| Absorption correction | Numerical ( |
|
| 0.742, 0.903 |
| No. of measured, independent and observed [ | 4429, 2217, 2132 |
|
| 0.013 |
| (sin θ/λ)max (Å−1) | 0.617 |
| Refinement | |
|
| 0.022, 0.054, 1.08 |
| No. of reflections | 2217 |
| No. of parameters | 198 |
| No. of restraints | 13 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.37, −0.35 |
Computer programs: SMART and SAINT (Bruker, 2008 ▸), SHELXTL (Sheldrick, 2008 ▸) and SHELXL2014 (Sheldrick, 2015 ▸).
| [Zn(H2O)6](NO3)2·2C6H5N5 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 7831 reflections | |
| θ = 2.8–29.5° | |
| α = 97.209 (2)° | µ = 1.16 mm−1 |
| β = 91.123 (2)° | |
| γ = 93.949 (2)° | Block, colorless |
| 0.49 × 0.21 × 0.09 mm |
| Bruker SMART CCD area detector diffractometer | 2132 reflections with |
| Radiation source: sealed tube | |
| phi and ω scans | θmax = 26.0°, θmin = 2.4° |
| Absorption correction: numerical (SADABS; Bruker, 2008) | |
| 4429 measured reflections | |
| 2217 independent reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.37 e Å−3 | |
| 2217 reflections | Δρmin = −0.35 e Å−3 |
| 198 parameters | Extinction correction: SHELXL2014 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 13 restraints | Extinction coefficient: 0.009 (2) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Zn1 | 0.0000 | 1.0000 | 1.0000 | 0.02186 (9) | |
| O1 | 0.25606 (19) | 1.00502 (12) | 0.86692 (9) | 0.0269 (2) | |
| H1W | 0.226 (4) | 0.9463 (19) | 0.8050 (8) | 0.044 (6)* | |
| H2W | 0.303 (3) | 1.0972 (10) | 0.8515 (16) | 0.041 (5)* | |
| O2 | 0.2699 (2) | 1.10732 (13) | 1.11255 (11) | 0.0345 (3) | |
| H3W | 0.307 (4) | 1.2067 (5) | 1.1282 (17) | 0.048 (6)* | |
| H4W | 0.401 (2) | 1.065 (3) | 1.116 (2) | 0.065 (7)* | |
| O3 | 0.0981 (2) | 0.78032 (12) | 1.02590 (10) | 0.0293 (2) | |
| H5W | 0.187 (3) | 0.725 (2) | 0.9825 (14) | 0.051 (6)* | |
| H6W | −0.008 (3) | 0.7116 (19) | 1.0423 (19) | 0.059 (7)* | |
| N1 | 0.5987 (2) | 0.68143 (14) | 0.16630 (10) | 0.0246 (3) | |
| N2 | 0.7365 (2) | 0.58336 (15) | 0.10516 (11) | 0.0270 (3) | |
| N3 | 0.6508 (2) | 0.43523 (15) | 0.10431 (11) | 0.0296 (3) | |
| N4 | 0.4544 (2) | 0.43180 (14) | 0.16488 (11) | 0.0269 (3) | |
| N5 | −0.0918 (2) | 0.58146 (17) | 0.38266 (11) | 0.0315 (3) | |
| H5N | −0.180 (3) | 0.5136 (17) | 0.4067 (15) | 0.042 (5)* | |
| C1 | 0.4273 (2) | 0.58463 (16) | 0.20195 (12) | 0.0212 (3) | |
| C2 | 0.2376 (2) | 0.64009 (17) | 0.27458 (11) | 0.0218 (3) | |
| C3 | 0.2065 (3) | 0.80168 (18) | 0.30257 (13) | 0.0284 (3) | |
| H3A | 0.3075 | 0.8778 | 0.2748 | 0.034* | |
| C4 | 0.0250 (3) | 0.8491 (2) | 0.37189 (14) | 0.0334 (4) | |
| H4 | 0.0048 | 0.9570 | 0.3914 | 0.040* | |
| C5 | −0.1243 (3) | 0.7363 (2) | 0.41142 (14) | 0.0345 (4) | |
| H5 | −0.2470 | 0.7668 | 0.4578 | 0.041* | |
| C6 | 0.0827 (3) | 0.53073 (19) | 0.31686 (13) | 0.0279 (3) | |
| H6 | 0.0997 | 0.4219 | 0.2996 | 0.033* | |
| N6 | 0.6295 (3) | 0.22071 (16) | 0.38657 (12) | 0.0353 (3) | |
| O4 | 0.5953 (2) | 0.34960 (14) | 0.44531 (11) | 0.0442 (3) | |
| O5 | 0.8117 (2) | 0.21012 (15) | 0.33009 (11) | 0.0431 (3) | |
| O6 | 0.4892 (4) | 0.1062 (2) | 0.38679 (19) | 0.1001 (8) |
| Zn1 | 0.02070 (14) | 0.01556 (13) | 0.02905 (15) | 0.00093 (8) | 0.00394 (9) | 0.00145 (9) |
| O1 | 0.0295 (6) | 0.0203 (5) | 0.0304 (6) | −0.0002 (4) | 0.0092 (4) | 0.0015 (4) |
| O2 | 0.0292 (6) | 0.0230 (6) | 0.0485 (7) | −0.0009 (5) | −0.0073 (5) | −0.0031 (5) |
| O3 | 0.0283 (6) | 0.0193 (5) | 0.0419 (6) | 0.0056 (4) | 0.0149 (5) | 0.0063 (5) |
| N1 | 0.0232 (6) | 0.0217 (6) | 0.0282 (6) | −0.0018 (5) | 0.0064 (5) | 0.0013 (5) |
| N2 | 0.0232 (6) | 0.0257 (7) | 0.0315 (7) | 0.0011 (5) | 0.0082 (5) | 0.0013 (5) |
| N3 | 0.0282 (7) | 0.0241 (6) | 0.0360 (7) | 0.0024 (5) | 0.0095 (6) | 0.0006 (5) |
| N4 | 0.0268 (7) | 0.0199 (6) | 0.0333 (7) | −0.0005 (5) | 0.0086 (5) | 0.0006 (5) |
| N5 | 0.0275 (7) | 0.0374 (8) | 0.0295 (7) | −0.0062 (6) | 0.0086 (6) | 0.0067 (6) |
| C1 | 0.0217 (7) | 0.0197 (7) | 0.0214 (7) | −0.0017 (5) | 0.0015 (5) | 0.0014 (5) |
| C2 | 0.0218 (7) | 0.0228 (7) | 0.0199 (7) | −0.0015 (5) | 0.0018 (5) | 0.0002 (5) |
| C3 | 0.0311 (8) | 0.0239 (7) | 0.0285 (8) | −0.0041 (6) | 0.0076 (6) | −0.0004 (6) |
| C4 | 0.0373 (9) | 0.0279 (8) | 0.0332 (8) | 0.0044 (7) | 0.0079 (7) | −0.0049 (6) |
| C5 | 0.0283 (8) | 0.0457 (10) | 0.0284 (8) | 0.0044 (7) | 0.0092 (6) | −0.0015 (7) |
| C6 | 0.0279 (8) | 0.0255 (8) | 0.0297 (8) | −0.0030 (6) | 0.0055 (6) | 0.0033 (6) |
| N6 | 0.0398 (8) | 0.0279 (7) | 0.0346 (8) | −0.0094 (6) | 0.0107 (6) | −0.0048 (6) |
| O4 | 0.0508 (8) | 0.0301 (6) | 0.0480 (7) | −0.0067 (5) | 0.0237 (6) | −0.0080 (5) |
| O5 | 0.0428 (7) | 0.0333 (6) | 0.0502 (8) | −0.0024 (5) | 0.0194 (6) | −0.0063 (6) |
| O6 | 0.0959 (14) | 0.0607 (11) | 0.1238 (16) | −0.0531 (10) | 0.0672 (13) | −0.0446 (11) |
| Zn1—O3 | 2.0353 (11) | N4—C1 | 1.3345 (19) |
| Zn1—O3i | 2.0354 (11) | N5—C6 | 1.339 (2) |
| Zn1—O2 | 2.1011 (12) | N5—C5 | 1.339 (2) |
| Zn1—O2i | 2.1011 (12) | N5—H5N | 0.8201 (11) |
| Zn1—O1i | 2.1841 (11) | C1—C2 | 1.463 (2) |
| Zn1—O1 | 2.1841 (11) | C2—C6 | 1.381 (2) |
| O1—H1W | 0.8500 | C2—C3 | 1.391 (2) |
| O1—H2W | 0.8499 | C3—C4 | 1.385 (2) |
| O2—H3W | 0.8499 | C3—H3A | 0.9300 |
| O2—H4W | 0.8499 | C4—C5 | 1.367 (2) |
| O3—H5W | 0.8499 | C4—H4 | 0.9300 |
| O3—H6W | 0.8501 | C5—H5 | 0.9300 |
| N1—C1 | 1.3384 (18) | C6—H6 | 0.9300 |
| N1—N2 | 1.3405 (18) | N6—O6 | 1.210 (2) |
| N2—N3 | 1.3113 (18) | N6—O5 | 1.2485 (18) |
| N3—N4 | 1.3421 (18) | N6—O4 | 1.2525 (18) |
| O3—Zn1—O3i | 180.0 | N2—N3—N4 | 109.65 (12) |
| O3—Zn1—O2 | 90.01 (5) | C1—N4—N3 | 104.64 (12) |
| O3i—Zn1—O2 | 89.99 (5) | C6—N5—C5 | 122.90 (14) |
| O3—Zn1—O2i | 89.99 (5) | C6—N5—H5N | 117.6 (14) |
| O3i—Zn1—O2i | 90.01 (5) | C5—N5—H5N | 119.5 (14) |
| O2—Zn1—O2i | 180.0 | N4—C1—N1 | 111.53 (13) |
| O3—Zn1—O1i | 90.53 (4) | N4—C1—C2 | 124.52 (13) |
| O3i—Zn1—O1i | 89.47 (4) | N1—C1—C2 | 123.93 (13) |
| O2—Zn1—O1i | 92.10 (5) | C6—C2—C3 | 118.26 (14) |
| O2i—Zn1—O1i | 87.90 (5) | C6—C2—C1 | 119.94 (13) |
| O3—Zn1—O1 | 89.47 (4) | C3—C2—C1 | 121.80 (13) |
| O3i—Zn1—O1 | 90.53 (4) | C4—C3—C2 | 119.93 (14) |
| O2—Zn1—O1 | 87.90 (5) | C4—C3—H3A | 120.0 |
| O2i—Zn1—O1 | 92.10 (5) | C2—C3—H3A | 120.0 |
| O1i—Zn1—O1 | 180.0 | C5—C4—C3 | 119.67 (15) |
| Zn1—O1—H1W | 118.9 (14) | C5—C4—H4 | 120.2 |
| Zn1—O1—H2W | 115.7 (13) | C3—C4—H4 | 120.2 |
| H1W—O1—H2W | 107.0 (18) | N5—C5—C4 | 119.30 (15) |
| Zn1—O2—H3W | 126.7 (15) | N5—C5—H5 | 120.3 |
| Zn1—O2—H4W | 120.1 (17) | C4—C5—H5 | 120.3 |
| H3W—O2—H4W | 104 (2) | N5—C6—C2 | 119.93 (15) |
| Zn1—O3—H5W | 123.7 (14) | N5—C6—H6 | 120.0 |
| Zn1—O3—H6W | 118.5 (15) | C2—C6—H6 | 120.0 |
| H5W—O3—H6W | 103 (2) | O6—N6—O5 | 120.33 (15) |
| C1—N1—N2 | 104.70 (12) | O6—N6—O4 | 120.02 (15) |
| N3—N2—N1 | 109.48 (11) | O5—N6—O4 | 119.63 (13) |
| C1—N1—N2—N3 | 0.11 (16) | N1—C1—C2—C3 | 7.1 (2) |
| N1—N2—N3—N4 | −0.01 (17) | C6—C2—C3—C4 | 0.5 (2) |
| N2—N3—N4—C1 | −0.09 (17) | C1—C2—C3—C4 | −179.80 (14) |
| N3—N4—C1—N1 | 0.17 (17) | C2—C3—C4—C5 | −0.7 (3) |
| N3—N4—C1—C2 | −178.53 (13) | C6—N5—C5—C4 | 0.5 (3) |
| N2—N1—C1—N4 | −0.18 (16) | C3—C4—C5—N5 | 0.2 (3) |
| N2—N1—C1—C2 | 178.53 (13) | C5—N5—C6—C2 | −0.7 (2) |
| N4—C1—C2—C6 | 5.4 (2) | C3—C2—C6—N5 | 0.2 (2) |
| N1—C1—C2—C6 | −173.17 (14) | C1—C2—C6—N5 | −179.53 (13) |
| N4—C1—C2—C3 | −174.32 (15) |
| H··· | ||||
| O1—H1 | 0.85 | 1.96 | 2.8067 (17) | 172 |
| O1—H2 | 0.85 | 1.96 | 2.8029 (17) | 173 |
| O2—H3 | 0.85 | 2.02 | 2.8589 (17) | 170 |
| O2—H4 | 0.85 | 2.08 | 2.9228 (17) | 171 |
| O3—H5 | 0.85 | 1.91 | 2.7446 (17) | 168 |
| O3—H6 | 0.85 | 2.72 | 3.4294 (17) | 142 |
| O3—H6 | 0.85 | 1.97 | 2.8076 (17) | 169 |
| N5—H5 | 0.82 | 2.61 | 3.344 (2) | 149 |
| N5—H5 | 0.82 | 1.92 | 2.7384 (18) | 173 |
| N5—H5 | 0.82 | 2.62 | 3.1347 (19) | 123 |
| C4—H4···O5viii | 0.93 | 2.65 | 3.452 (2) | 145 |
| C5—H5···O4ix | 0.93 | 2.52 | 3.292 (2) | 141 |
| C5—H5···O6ix | 0.93 | 2.52 | 3.422 (3) | 165 |
| C6—H6···O5vii | 0.93 | 2.41 | 3.047 (2) | 126 |