Literature DB >> 21589327

Tetra-aqua-bis-[5-(3-pyrid-yl)tetra-zolido-κN]zinc(II) tetra-hydrate.

Yi-Qiang Mu1, Jun Zhao, Cai Li.   

Abstract

The title compound, [Zn(C(6)H(4)N(5))(2)(H(2)O)(4)]·4H(2)O, was synthesized by the hydro-thermal reaction of Zn(CH(3)COO)(2)·2H(2)O with 3-(2H-tetra-zol-5-yl)pyridine. The Zn(II) ion is located on an inversion center and is coordinated by two pyridine N atoms from two 5-(3-pyrid-yl)tetra-zolide ligands and four coordinated water mol-ecules in a slightly distorted octa-hedral geometry. The dihedral angle between the pyridine and tetra-zole rings is 9.920 (7)°. In the crystal, mol-ecules are linked into a three-dimensional network by inter-molecular O-H⋯O and O-H⋯N hydrogen bonds involving the tetra-zole group N atoms, the aqua ligands and solvent water mol-ecules.

Entities:  

Year:  2010        PMID: 21589327      PMCID: PMC3011773          DOI: 10.1107/S1600536810048464

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 5-(3-pyrid­yl)tetra­zolate complexes, see: Xiong et al. (2002 ▶); Wang et al. (2005 ▶). For a related structure, see: Zhang et al. (2006 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

[Zn(C6H4N5)2(H2O)4]·4H2O M = 501.78 Triclinic, a = 8.0930 (13) Å b = 8.5836 (14) Å c = 8.7082 (14) Å α = 85.942 (2)° β = 65.075 (2)° γ = 72.369 (2)° V = 521.69 (15) Å3 Z = 1 Mo Kα radiation μ = 1.24 mm−1 T = 296 K 0.35 × 0.23 × 0.18 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.717, T max = 0.800 2640 measured reflections 1814 independent reflections 1788 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.071 S = 1.00 1814 reflections 142 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.48 e Å−3 Data collection: SMART (Bruker, 2007) ▶; cell refinement: SAINT (Bruker, 2007) ▶; data reduction: SAINT ▶; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048464/lh5162sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048464/lh5162Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C6H4N5)2(H2O)4]·4H2OZ = 1
Mr = 501.78F(000) = 260
Triclinic, P1Dx = 1.597 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.0930 (13) ÅCell parameters from 2640 reflections
b = 8.5836 (14) Åθ = 2.5–25.0°
c = 8.7082 (14) ŵ = 1.24 mm1
α = 85.942 (2)°T = 296 K
β = 65.075 (2)°Prism, colorless
γ = 72.369 (2)°0.35 × 0.23 × 0.18 mm
V = 521.69 (15) Å3
Bruker SMART CCD diffractometer1814 independent reflections
Radiation source: fine-focus sealed tube1788 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→9
Tmin = 0.717, Tmax = 0.800k = −10→9
2640 measured reflectionsl = −9→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.038P)2 + 0.3832P] where P = (Fo2 + 2Fc2)/3
1814 reflections(Δ/σ)max < 0.001
142 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.48 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn11.00000.50000.00000.02415 (12)
N10.9006 (2)0.5872 (2)0.2605 (2)0.0253 (3)
N21.2471 (2)0.8188 (2)0.3456 (2)0.0295 (4)
N31.3341 (2)0.8789 (2)0.4176 (2)0.0323 (4)
N41.2417 (3)0.8856 (2)0.5824 (2)0.0316 (4)
N51.0910 (2)0.8308 (2)0.6230 (2)0.0277 (4)
O11.2917 (2)0.49525 (18)−0.06216 (18)0.0332 (3)
H1A1.36350.4132−0.03660.050*
H1B1.31820.5786−0.04380.050*
O20.9302 (2)0.74166 (18)−0.05239 (19)0.0431 (4)
H2A0.97490.7802−0.14880.052*
H2B0.84790.81830.02140.065*
O30.5798 (2)0.25397 (19)1.00465 (19)0.0359 (3)
H3B0.59380.17031.06160.054*
H3A0.63170.21650.90190.054*
O40.6545 (2)−0.01658 (18)0.19326 (18)0.0337 (3)
H4A0.69300.02110.25540.051*
H4B0.5598−0.04800.25930.051*
C11.0065 (3)0.6594 (2)0.2951 (2)0.0280 (4)
H11.11700.66960.20550.034*
C20.9644 (3)0.7203 (2)0.4543 (2)0.0233 (4)
C30.7977 (3)0.7081 (3)0.5869 (2)0.0284 (4)
H30.76300.74740.69650.034*
C40.6849 (3)0.6368 (3)0.5532 (3)0.0332 (5)
H40.57160.62860.64010.040*
C50.7393 (3)0.5773 (2)0.3904 (2)0.0283 (4)
H50.66160.52870.37000.034*
C61.0978 (3)0.7907 (2)0.4753 (2)0.0234 (4)
U11U22U33U12U13U23
Zn10.02550 (18)0.02944 (19)0.01939 (18)−0.01032 (13)−0.00976 (13)0.00137 (12)
N10.0254 (8)0.0299 (8)0.0232 (8)−0.0103 (7)−0.0113 (7)0.0027 (6)
N20.0297 (9)0.0378 (9)0.0237 (8)−0.0157 (7)−0.0099 (7)0.0023 (7)
N30.0321 (9)0.0394 (10)0.0304 (9)−0.0173 (8)−0.0134 (7)0.0026 (7)
N40.0353 (9)0.0353 (9)0.0318 (9)−0.0161 (8)−0.0176 (8)0.0031 (7)
N50.0331 (9)0.0313 (9)0.0231 (8)−0.0147 (7)−0.0127 (7)0.0033 (7)
O10.0273 (7)0.0398 (8)0.0351 (8)−0.0100 (6)−0.0148 (6)−0.0026 (6)
O20.0585 (10)0.0300 (8)0.0218 (7)−0.0056 (7)−0.0051 (7)0.0046 (6)
O30.0379 (8)0.0388 (8)0.0276 (8)−0.0126 (7)−0.0099 (6)0.0030 (6)
O40.0364 (8)0.0421 (8)0.0248 (7)−0.0187 (7)−0.0099 (6)0.0004 (6)
C10.0277 (10)0.0370 (11)0.0201 (9)−0.0155 (8)−0.0067 (8)0.0013 (8)
C20.0246 (9)0.0236 (9)0.0229 (9)−0.0071 (7)−0.0115 (7)0.0034 (7)
C30.0274 (10)0.0355 (10)0.0202 (9)−0.0096 (8)−0.0076 (8)−0.0004 (8)
C40.0254 (10)0.0461 (12)0.0258 (10)−0.0154 (9)−0.0055 (8)0.0021 (9)
C50.0253 (10)0.0357 (11)0.0275 (10)−0.0128 (8)−0.0123 (8)0.0033 (8)
C60.0260 (9)0.0231 (9)0.0227 (9)−0.0086 (7)−0.0111 (7)0.0037 (7)
Zn1—O2i2.0503 (15)O2—H2A0.8498
Zn1—O22.0503 (15)O2—H2B0.8498
Zn1—N1i2.1662 (16)O3—H3B0.8499
Zn1—N12.1662 (16)O3—H3A0.8499
Zn1—O1i2.1760 (14)O4—H4A0.8498
Zn1—O12.1760 (14)O4—H4B0.8498
N1—C11.333 (3)C1—C21.381 (3)
N1—C51.341 (2)C1—H10.9300
N2—C61.335 (2)C2—C31.385 (3)
N2—N31.339 (2)C2—C61.463 (3)
N3—N41.305 (3)C3—C41.373 (3)
N4—N51.339 (2)C3—H30.9300
N5—C61.329 (3)C4—C51.380 (3)
O1—H1A0.8499C4—H40.9300
O1—H1B0.8500C5—H50.9300
O2i—Zn1—O2180.0H1A—O1—H1B106.1
O2i—Zn1—N1i86.61 (6)Zn1—O2—H2A126.3
O2—Zn1—N1i93.39 (6)Zn1—O2—H2B123.6
O2i—Zn1—N193.39 (6)H2A—O2—H2B110.0
O2—Zn1—N186.61 (6)H3B—O3—H3A105.1
N1i—Zn1—N1180.0H4A—O4—H4B107.1
O2i—Zn1—O1i91.09 (7)N1—C1—C2124.80 (17)
O2—Zn1—O1i88.91 (7)N1—C1—H1117.6
N1i—Zn1—O1i92.52 (6)C2—C1—H1117.6
N1—Zn1—O1i87.48 (6)C1—C2—C3117.46 (17)
O2i—Zn1—O188.91 (7)C1—C2—C6119.00 (17)
O2—Zn1—O191.09 (7)C3—C2—C6123.53 (17)
N1i—Zn1—O187.48 (6)C4—C3—C2118.58 (18)
N1—Zn1—O192.52 (6)C4—C3—H3120.7
O1i—Zn1—O1180.00 (8)C2—C3—H3120.7
C1—N1—C5116.84 (17)C3—C4—C5120.07 (18)
C1—N1—Zn1117.54 (12)C3—C4—H4120.0
C5—N1—Zn1125.61 (13)C5—C4—H4120.0
C6—N2—N3104.97 (16)N1—C5—C4122.24 (18)
N4—N3—N2109.42 (16)N1—C5—H5118.9
N3—N4—N5109.47 (16)C4—C5—H5118.9
C6—N5—N4105.07 (15)N5—C6—N2111.07 (16)
Zn1—O1—H1A118.6N5—C6—C2125.41 (17)
Zn1—O1—H1B122.1N2—C6—C2123.50 (17)
O2i—Zn1—N1—C1109.54 (15)N1—C1—C2—C6177.49 (18)
O2—Zn1—N1—C1−70.46 (15)C1—C2—C3—C40.0 (3)
N1i—Zn1—N1—C1−69 (100)C6—C2—C3—C4−178.70 (19)
O1i—Zn1—N1—C1−159.52 (15)C2—C3—C4—C50.8 (3)
O1—Zn1—N1—C120.48 (15)C1—N1—C5—C4−0.7 (3)
O2i—Zn1—N1—C5−71.60 (16)Zn1—N1—C5—C4−179.59 (15)
O2—Zn1—N1—C5108.40 (16)C3—C4—C5—N1−0.5 (3)
N1i—Zn1—N1—C5110 (100)N4—N5—C6—N20.0 (2)
O1i—Zn1—N1—C519.35 (16)N4—N5—C6—C2178.35 (17)
O1—Zn1—N1—C5−160.65 (16)N3—N2—C6—N5−0.2 (2)
C6—N2—N3—N40.2 (2)N3—N2—C6—C2−178.53 (17)
N2—N3—N4—N5−0.2 (2)C1—C2—C6—N5−169.29 (19)
N3—N4—N5—C60.1 (2)C3—C2—C6—N59.4 (3)
C5—N1—C1—C21.6 (3)C1—C2—C6—N28.8 (3)
Zn1—N1—C1—C2−179.40 (15)C3—C2—C6—N2−172.44 (19)
N1—C1—C2—C3−1.3 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O3ii0.852.022.848 (2)165
O1—H1B···O3iii0.851.972.813 (2)171
O2—H2A···N5iv0.851.892.733 (2)171
O2—H2B···O4v0.851.922.768 (2)177
O3—H3B···O4vi0.851.972.811 (2)173
O3—H3A···N2iii0.851.962.792 (2)167
O4—H4A···N4iii0.851.992.838 (2)175
O4—H4B···N3vii0.852.022.870 (2)180
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O3i0.852.022.848 (2)165
O1—H1B⋯O3ii0.851.972.813 (2)171
O2—H2A⋯N5iii0.851.892.733 (2)171
O2—H2B⋯O4iv0.851.922.768 (2)177
O3—H3B⋯O4v0.851.972.811 (2)173
O3—H3A⋯N2ii0.851.962.792 (2)167
O4—H4A⋯N4ii0.851.992.838 (2)175
O4—H4B⋯N3vi0.852.022.870 (2)180

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  3 in total

1.  Novel, acentric metal-organic coordination polymers from hydrothermal reactions involving in situ ligand synthesis.

Authors:  Ren-Gen Xiong; Xiang Xue; Hong Zhao; Xiao-Zeng You; Brendan F Abrahams; Ziling Xue
Journal:  Angew Chem Int Ed Engl       Date:  2002-10-18       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Syntheses, crystal structures, and luminescent properties of three novel zinc coordination polymers with tetrazolyl ligands.

Authors:  Xi-Sen Wang; Yun-Zhi Tang; Xue-Feng Huang; Zhi-Rong Qu; Chi-Ming Che; Philip Wai Hong Chan; Ren-Gen Xiong
Journal:  Inorg Chem       Date:  2005-07-25       Impact factor: 5.165

  3 in total
  2 in total

1.  Tetra-aqua-bis-[5-(pyridin-3-yl)tetra-zolido-κN⁵]manganese(II) tetra-hydrate.

Authors:  Chen Qi; Xiang He; Min Shao; Ming-Xing Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

2.  Hexa-aqua-zinc(II) dinitrate bis-[5-(pyridinium-3-yl)tetra-zol-1-ide].

Authors:  Ignacio Chi-Duran; Javier Enriquez; Andres Vega; Felipe Herrera; Dinesh Pratap Singh
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-08-14
  2 in total

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