Literature DB >> 21522526

Hexaaqua-magnesium dibromide 5-(pyridinium-3-yl)tetra-zol-1-ide.

Jing Dai1, Xin-Yuan Chen.   

Abstract

In the title compound, [Mg(H(2)O)(6)]Br(2)·2C(6)H(5)N(5), the Mg(II) atom, lying on an inversion center, is coordinated by six water mol-ecules in a distorted octa-hedral geometry. The pyridine and tetra-zole rings in the 5-(pyridinium-3-yl)tetra-zol-1-ide zwitterion are nearly coplanar, twisted from each other by a dihedral angle of 5.70 (1)°. The zwitterions, Br anions and complex cations are connected by O-H⋯Br, O-H⋯N and N-H⋯Br hydrogen bonds, leading to the formation of a three-dimensional network.

Entities:  

Year:  2010        PMID: 21522526      PMCID: PMC3050346          DOI: 10.1107/S1600536810052992

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For tetra­zole derivatives, see: Fu et al. (2008 ▶); Zhao et al. (2008 ▶). For the crystal structures and properties of related compounds, see: Fu et al. (2007 ▶, 2009 ▶); Fu & Xiong (2008 ▶).

Experimental

Crystal data

[Mg(H2O)6]Br2·2C6H5N5 M = 586.53 Triclinic, a = 7.3439 (15) Å b = 8.7786 (18) Å c = 9.5863 (19) Å α = 94.04 (3)° β = 90.94 (3)° γ = 111.75 (3)° V = 572.0 (2) Å3 Z = 1 Mo Kα radiation μ = 3.62 mm−1 T = 298 K 0.40 × 0.05 × 0.05 mm

Data collection

Rigaku SCXmini CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.89, T max = 0.95 5933 measured reflections 2627 independent reflections 2172 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.097 S = 1.09 2627 reflections 142 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.52 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052992/hy2389sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052992/hy2389Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mg(H2O)6]Br2·2C6H5N5Z = 1
Mr = 586.53F(000) = 294
Triclinic, P1Dx = 1.703 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3439 (15) ÅCell parameters from 2627 reflections
b = 8.7786 (18) Åθ = 3.1–24.5°
c = 9.5863 (19) ŵ = 3.62 mm1
α = 94.04 (3)°T = 298 K
β = 90.94 (3)°Block, colourless
γ = 111.75 (3)°0.40 × 0.05 × 0.05 mm
V = 572.0 (2) Å3
Rigaku SCXmini CCD diffractometer2627 independent reflections
Radiation source: fine-focus sealed tube2172 reflections with I > 2σ(I)
graphiteRint = 0.040
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −11→11
Tmin = 0.89, Tmax = 0.95l = −12→12
5933 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0426P)2 + 0.1011P] where P = (Fo2 + 2Fc2)/3
2627 reflections(Δ/σ)max = 0.001
142 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.52 e Å3
xyzUiso*/Ueq
N40.3716 (3)0.6009 (3)0.6076 (3)0.0347 (6)
N20.2637 (3)0.5318 (3)0.3932 (2)0.0315 (5)
C60.1639 (4)0.4135 (3)0.4740 (3)0.0263 (6)
N50.2266 (3)0.4528 (3)0.6073 (2)0.0328 (5)
C20.0038 (4)0.2612 (3)0.4229 (3)0.0272 (6)
C3−0.1073 (4)0.1506 (4)0.5142 (3)0.0319 (6)
H3−0.07920.17300.61010.038*
N1−0.1923 (4)0.0847 (4)0.2374 (3)0.0481 (7)
H1A−0.22020.06420.14890.058*
N30.3947 (3)0.6479 (3)0.4800 (3)0.0360 (6)
C1−0.0427 (5)0.2234 (4)0.2822 (3)0.0398 (7)
H10.02960.29410.21800.048*
C5−0.3000 (5)−0.0234 (4)0.3232 (4)0.0464 (8)
H5−0.4017−0.11880.28730.056*
C4−0.2598 (4)0.0073 (4)0.4639 (4)0.0408 (7)
H4−0.3335−0.06680.52530.049*
Mg10.50000.50001.00000.0303 (3)
O1W0.2634 (3)0.3471 (3)0.8692 (2)0.0497 (6)
H1WA0.24530.36740.79060.075*
H1WB0.18060.24670.88490.075*
O2W0.5507 (3)0.6851 (2)0.8697 (2)0.0465 (6)
H2WA0.51170.66020.78290.070*
H2WB0.60980.77770.87800.070*
O3W0.3123 (4)0.5786 (3)1.1155 (2)0.0532 (6)
H3WA0.27600.65851.08340.080*
H3WB0.30300.56061.21300.080*
Br10.79518 (5)0.08632 (4)0.89951 (3)0.04481 (14)
U11U22U33U12U13U23
N40.0315 (12)0.0309 (13)0.0353 (14)0.0055 (11)−0.0054 (10)−0.0025 (11)
N20.0307 (12)0.0285 (12)0.0293 (13)0.0041 (10)0.0010 (10)0.0027 (10)
C60.0242 (13)0.0277 (14)0.0257 (14)0.0080 (11)0.0012 (10)0.0028 (11)
N50.0325 (12)0.0336 (13)0.0262 (13)0.0053 (11)−0.0038 (10)0.0027 (10)
C20.0270 (13)0.0270 (14)0.0269 (14)0.0097 (11)0.0010 (11)0.0009 (11)
C30.0309 (14)0.0311 (15)0.0313 (15)0.0083 (12)0.0010 (11)0.0051 (12)
N10.0513 (16)0.0464 (17)0.0333 (15)0.0059 (14)−0.0096 (12)−0.0124 (13)
N30.0332 (13)0.0292 (13)0.0411 (15)0.0063 (11)0.0026 (11)0.0039 (11)
C10.0410 (16)0.0376 (17)0.0297 (16)0.0025 (14)0.0027 (13)−0.0010 (13)
C50.0369 (17)0.0301 (17)0.061 (2)0.0016 (14)−0.0041 (16)−0.0084 (16)
C40.0344 (16)0.0307 (16)0.052 (2)0.0049 (13)0.0049 (14)0.0061 (15)
Mg10.0387 (7)0.0245 (7)0.0216 (7)0.0047 (6)0.0004 (5)0.0022 (5)
O1W0.0520 (13)0.0454 (14)0.0302 (12)−0.0069 (11)−0.0088 (10)0.0073 (10)
O2W0.0710 (15)0.0213 (10)0.0310 (12)−0.0015 (10)−0.0103 (10)0.0041 (9)
O3W0.0792 (17)0.0629 (17)0.0342 (13)0.0432 (15)0.0173 (12)0.0161 (12)
Br10.0546 (2)0.03047 (19)0.0402 (2)0.00473 (15)0.00206 (14)0.00592 (14)
N4—N31.312 (4)C5—H50.9300
N4—N51.341 (3)C4—H40.9300
N2—N31.336 (3)Mg1—O2Wi2.048 (2)
N2—C61.336 (3)Mg1—O2W2.048 (2)
C6—N51.329 (3)Mg1—O3Wi2.061 (2)
C6—C21.460 (4)Mg1—O3W2.061 (2)
C2—C11.373 (4)Mg1—O1W2.087 (2)
C2—C31.390 (4)Mg1—O1Wi2.087 (2)
C3—C41.386 (4)O1W—H1WA0.8068
C3—H30.9300O1W—H1WB0.8907
N1—C51.333 (4)O2W—H2WA0.8615
N1—C11.339 (4)O2W—H2WB0.7636
N1—H1A0.8600O3W—H3WA0.9085
C1—H10.9300O3W—H3WB0.9576
C5—C41.363 (5)
N3—N4—N5110.0 (2)O2Wi—Mg1—O2W180.000 (1)
N3—N2—C6105.2 (2)O2Wi—Mg1—O3Wi91.93 (10)
N5—C6—N2111.4 (2)O2W—Mg1—O3Wi88.07 (10)
N5—C6—C2124.2 (2)O2Wi—Mg1—O3W88.07 (10)
N2—C6—C2124.4 (2)O2W—Mg1—O3W91.93 (10)
C6—N5—N4104.5 (2)O3Wi—Mg1—O3W180.000 (1)
C1—C2—C3117.8 (3)O2Wi—Mg1—O1W89.55 (9)
C1—C2—C6120.7 (3)O2W—Mg1—O1W90.45 (9)
C3—C2—C6121.5 (3)O3Wi—Mg1—O1W90.10 (11)
C4—C3—C2120.7 (3)O3W—Mg1—O1W89.90 (11)
C4—C3—H3119.6O2Wi—Mg1—O1Wi90.45 (9)
C2—C3—H3119.6O2W—Mg1—O1Wi89.55 (9)
C5—N1—C1123.3 (3)O3Wi—Mg1—O1Wi89.90 (11)
C5—N1—H1A118.3O3W—Mg1—O1Wi90.10 (11)
C1—N1—H1A118.3O1W—Mg1—O1Wi180.000 (1)
N4—N3—N2108.8 (2)Mg1—O1W—H1WA122.5
N1—C1—C2119.9 (3)Mg1—O1W—H1WB126.6
N1—C1—H1120.1H1WA—O1W—H1WB110.2
C2—C1—H1120.1Mg1—O2W—H2WA119.0
N1—C5—C4119.4 (3)Mg1—O2W—H2WB133.7
N1—C5—H5120.3H2WA—O2W—H2WB107.0
C4—C5—H5120.3Mg1—O3W—H3WA118.6
C5—C4—C3119.0 (3)Mg1—O3W—H3WB118.7
C5—C4—H4120.5H3WA—O3W—H3WB119.2
C3—C4—H4120.5
D—H···AD—HH···AD···AD—H···A
N1—H1A···Br1ii0.862.413.240 (3)161
O1W—H1WA···N50.811.982.780 (3)171
O1W—H1WB···Br1iii0.892.663.382 (3)138
O2W—H2WA···N40.861.892.738 (3)167
O2W—H2WB···Br1iv0.762.533.296 (2)178
O3W—H3WA···Br1i0.912.483.328 (2)156
O3W—H3WB···N2v0.961.782.730 (3)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Br1i0.862.413.240 (3)161
O1W—H1WA⋯N50.811.982.780 (3)171
O1W—H1WB⋯Br1ii0.892.663.382 (3)138
O2W—H2WA⋯N40.861.892.738 (3)167
O2W—H2WB⋯Br1iii0.762.533.296 (2)178
O3W—H3WA⋯Br1iv0.912.483.328 (2)156
O3W—H3WB⋯N2v0.961.782.730 (3)174

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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