Literature DB >> 21522848

5-(Pyridinium-3-yl)tetra-zol-1-ide hexa-aqua-magnesium dichloride.

Jing Dai1, Xin-Yuan Chen.   

Abstract

In the title compound, (C(6)H(5)N(5))(2)[Mg(H(2)O)(6)]Cl(2), the asymmetric unit contains one zwitterionic 5-(pyridinium-3-yl)tetra-zol-1-ide mol-ecule, one half of an [Mg(H(2)O)(6)](2+) cation ( symmetry) and one chloride ion. The Mg(II) ion is surrounded by six water mol-ecules, with their O atoms located at the apices, exhibiting a slightly distorted octa-hedral coordination. Mg-O bond lengths range from 2.0526 (14) to 2.0965 (16) Å [mean value = 2.068 Å]. The pyridine and tetra-zole rings are nearly coplanar and only twisted from each other by a dihedral angle of 5.68 (1)°. The zwitterionic organic mol-ecules, anions and cations are connected by O-H⋯Cl, O-H⋯N and N-H⋯Cl hydrogen bonds, leading to the formation of a three-dimensional network.

Entities:  

Year:  2011        PMID: 21522848      PMCID: PMC3051589          DOI: 10.1107/S160053681005419X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For tetra­zole derivatives, see: Zhao et al. (2008 ▶); Fu et al. (2008 ▶, 2009 ▶). For the crystal structures and properties of related compounds, see: Fu et al. (2007 ▶, 2009 ▶); Fu & Xiong (2008 ▶).

Experimental

Crystal data

(C6H5N5)2[Mg(H2O)6]Cl2 M = 497.61 Triclinic, a = 7.4354 (15) Å b = 8.4232 (17) Å c = 9.5817 (19) Å α = 94.06 (3)° β = 90.71 (3)° γ = 110.67 (3)° V = 559.60 (19) Å3 Z = 1 Mo Kα radiation μ = 0.37 mm−1 T = 298 K 0.40 × 0.05 × 0.05 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.89, T max = 0.95 5836 measured reflections 2552 independent reflections 2086 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.101 S = 1.09 2552 reflections 142 parameters 6 restraints H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681005419X/bx2339sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681005419X/bx2339Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C6H5N5)2[Mg(H2O)6]Cl2Z = 1
Mr = 497.61F(000) = 258
Triclinic, P1Dx = 1.477 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4354 (15) ÅCell parameters from 2552 reflections
b = 8.4232 (17) Åθ = 3.2–27.5°
c = 9.5817 (19) ŵ = 0.37 mm1
α = 94.06 (3)°T = 298 K
β = 90.71 (3)°Block, colourless
γ = 110.67 (3)°0.40 × 0.05 × 0.05 mm
V = 559.60 (19) Å3
Rigaku SCXmini diffractometer2552 independent reflections
Radiation source: fine-focus sealed tube2086 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.2°
CCD_Profile_fitting scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −10→10
Tmin = 0.89, Tmax = 0.95l = −12→12
5836 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0398P)2 + 0.1577P] where P = (Fo2 + 2Fc2)/3
2552 reflections(Δ/σ)max < 0.001
142 parametersΔρmax = 0.27 e Å3
6 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mg10.00000.50000.50000.0313 (2)
O1W0.0599 (2)0.69394 (16)0.36976 (13)0.0459 (4)
H1WA0.01130.67750.28690.069*
H1WB0.12280.79980.38590.069*
O2W0.2487 (2)0.64382 (19)0.62087 (14)0.0528 (4)
H2WA0.27660.62380.70250.079*
H2WB0.35310.71630.59610.079*
N20.2278 (2)0.46353 (18)0.10243 (15)0.0317 (3)
C60.3333 (2)0.5845 (2)0.02382 (17)0.0263 (3)
C20.4917 (2)0.7372 (2)0.07879 (18)0.0299 (4)
N30.1006 (2)0.34796 (18)0.01273 (16)0.0357 (3)
N40.1310 (2)0.39758 (19)−0.11389 (16)0.0362 (4)
N50.2776 (2)0.54786 (18)−0.11105 (15)0.0336 (3)
O3W0.1562 (2)0.3929 (2)0.37477 (15)0.0565 (4)
H3WA0.18240.41490.29060.085*
H3WB0.19340.31130.39140.085*
C30.6097 (3)0.8510 (2)−0.0093 (2)0.0370 (4)
H30.58790.8315−0.10580.044*
C10.5289 (3)0.7704 (2)0.2209 (2)0.0416 (5)
H10.45200.69690.28210.050*
N10.6760 (3)0.9086 (2)0.2710 (2)0.0528 (5)
H1A0.69780.92680.36020.063*
C40.7593 (3)0.9931 (2)0.0469 (3)0.0490 (5)
H40.83791.0697−0.01170.059*
C50.7908 (3)1.0201 (3)0.1877 (3)0.0543 (6)
H50.89121.11510.22640.065*
Cl10.31120 (8)0.08959 (6)0.40654 (6)0.05028 (17)
U11U22U33U12U13U23
Mg10.0380 (5)0.0285 (4)0.0220 (4)0.0051 (3)0.0002 (3)0.0023 (3)
O1W0.0647 (9)0.0284 (7)0.0290 (7)−0.0025 (6)−0.0112 (6)0.0042 (5)
O2W0.0463 (8)0.0564 (9)0.0343 (7)−0.0092 (7)−0.0087 (6)0.0112 (6)
N20.0320 (7)0.0299 (7)0.0284 (7)0.0051 (6)0.0011 (6)0.0025 (6)
C60.0244 (8)0.0257 (8)0.0266 (8)0.0066 (6)0.0011 (6)0.0009 (6)
C20.0260 (8)0.0260 (8)0.0358 (9)0.0079 (7)−0.0005 (7)−0.0019 (7)
N30.0304 (8)0.0296 (8)0.0405 (9)0.0030 (6)−0.0007 (6)0.0004 (6)
N40.0322 (8)0.0347 (8)0.0363 (8)0.0065 (6)−0.0073 (6)−0.0022 (6)
N50.0328 (8)0.0335 (8)0.0285 (8)0.0043 (6)−0.0026 (6)0.0032 (6)
O3W0.0863 (12)0.0675 (10)0.0347 (8)0.0479 (9)0.0192 (8)0.0157 (7)
C30.0323 (9)0.0317 (9)0.0450 (11)0.0082 (8)0.0038 (8)0.0052 (8)
C10.0380 (10)0.0383 (10)0.0391 (10)0.0037 (8)−0.0024 (8)−0.0062 (8)
N10.0490 (10)0.0494 (11)0.0477 (10)0.0071 (8)−0.0102 (8)−0.0201 (8)
C40.0358 (10)0.0284 (10)0.0754 (16)0.0023 (8)0.0065 (10)0.0041 (9)
C50.0372 (11)0.0329 (11)0.0798 (17)0.0004 (9)−0.0046 (11)−0.0158 (10)
Cl10.0557 (3)0.0341 (3)0.0536 (3)0.0067 (2)−0.0008 (2)0.0045 (2)
Mg1—O1W2.0526 (14)C2—C31.393 (3)
Mg1—O1Wi2.0526 (14)N3—N41.308 (2)
Mg1—O3Wi2.0552 (15)N4—N51.346 (2)
Mg1—O3W2.0552 (15)O3W—H3WA0.8500
Mg1—O2W2.0965 (16)O3W—H3WB0.8499
Mg1—O2Wi2.0965 (16)C3—C41.383 (3)
O1W—H1WA0.8500C3—H30.9300
O1W—H1WB0.8499C1—N11.338 (2)
O2W—H2WA0.8500C1—H10.9300
O2W—H2WB0.8499N1—C51.344 (3)
N2—C61.334 (2)N1—H1A0.8600
N2—N31.339 (2)C4—C51.356 (3)
C6—N51.333 (2)C4—H40.9300
C6—C21.462 (2)C5—H50.9300
C2—C11.375 (3)
O1W—Mg1—O1Wi180.00 (5)C1—C2—C3118.19 (17)
O1W—Mg1—O3Wi91.30 (6)C1—C2—C6120.00 (16)
O1Wi—Mg1—O3Wi88.70 (6)C3—C2—C6121.80 (16)
O1W—Mg1—O3W88.70 (6)N4—N3—N2109.00 (14)
O1Wi—Mg1—O3W91.30 (6)N3—N4—N5110.09 (14)
O3Wi—Mg1—O3W180.000 (1)C6—N5—N4104.18 (14)
O1W—Mg1—O2W88.73 (6)Mg1—O3W—H3WA124.6
O1Wi—Mg1—O2W91.27 (6)Mg1—O3W—H3WB127.9
O3Wi—Mg1—O2W89.27 (7)H3WA—O3W—H3WB107.1
O3W—Mg1—O2W90.73 (7)C4—C3—C2120.02 (19)
O1W—Mg1—O2Wi91.27 (6)C4—C3—H3120.0
O1Wi—Mg1—O2Wi88.73 (6)C2—C3—H3120.0
O3Wi—Mg1—O2Wi90.73 (7)N1—C1—C2120.00 (19)
O3W—Mg1—O2Wi89.27 (7)N1—C1—H1120.0
O2W—Mg1—O2Wi180.0C2—C1—H1120.0
Mg1—O1W—H1WA121.5C1—N1—C5122.59 (19)
Mg1—O1W—H1WB130.3C1—N1—H1A118.7
H1WA—O1W—H1WB107.9C5—N1—H1A118.7
Mg1—O2W—H2WA125.4C5—C4—C3119.6 (2)
Mg1—O2W—H2WB129.5C5—C4—H4120.2
H2WA—O2W—H2WB103.6C3—C4—H4120.2
C6—N2—N3105.15 (14)N1—C5—C4119.60 (18)
N5—C6—N2111.57 (14)N1—C5—H5120.2
N5—C6—C2124.30 (15)C4—C5—H5120.2
N2—C6—C2124.13 (15)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···N4ii0.851.902.737 (2)169
O1W—H1WB···Cl1iii0.852.343.1848 (17)174
O2W—H2WA···N5iv0.851.942.775 (2)167
O2W—H2WB···Cl1v0.852.463.2764 (19)163
N1—H1A···Cl1v0.862.253.088 (2)165
O3W—H3WA···N20.851.892.735 (2)177
O3W—H3WB···Cl10.852.343.1822 (17)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯N4i0.851.902.737 (2)169
O1W—H1WB⋯Cl1ii0.852.343.1848 (17)174
O2W—H2WA⋯N5iii0.851.942.775 (2)167
O2W—H2WB⋯Cl1iv0.852.463.2764 (19)163
N1—H1A⋯Cl1iv0.862.253.088 (2)165
O3W—H3WA⋯N20.851.892.735 (2)177
O3W—H3WB⋯Cl10.852.343.1822 (17)172

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  Dielectric anisotropy of a homochiral trinuclear nickel(II) complex.

Authors:  Da-Wei Fu; Yu-Mei Song; Guo-Xi Wang; Qiong Ye; Ren-Gen Xiong; Tomoyuki Akutagawa; Takayoshi Nakamura; Philip Wai Hong Chan; Songping D Huang
Journal:  J Am Chem Soc       Date:  2007-04-12       Impact factor: 15.419

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The first metal-organic framework (MOF) of Imazethapyr and its SHG, piezoelectric and ferroelectric properties.

Authors:  Da-Wei Fu; Wen Zhang; Ren-Gen Xiong
Journal:  Dalton Trans       Date:  2008-06-03       Impact factor: 4.390

Review 4.  In situ hydrothermal synthesis of tetrazole coordination polymers with interesting physical properties.

Authors:  Hong Zhao; Zhi-Rong Qu; Heng-Yun Ye; Ren-Gen Xiong
Journal:  Chem Soc Rev       Date:  2007-10-01       Impact factor: 54.564

  4 in total
  1 in total

1.  Hexa-aqua-zinc(II) dinitrate bis-[5-(pyridinium-3-yl)tetra-zol-1-ide].

Authors:  Ignacio Chi-Duran; Javier Enriquez; Andres Vega; Felipe Herrera; Dinesh Pratap Singh
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-08-14
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.