| Literature DB >> 21522848 |
Abstract
In the title compound, (C(6)H(5)N(5))(2)[Mg(H(2)O)(6)]Cl(2), the asymmetric unit contains one zwitterionic 5-(pyridinium-3-yl)tetra-zol-1-ide mol-ecule, one half of an [Mg(H(2)O)(6)](2+) cation ( symmetry) and one chloride ion. The Mg(II) ion is surrounded by six water mol-ecules, with their O atoms located at the apices, exhibiting a slightly distorted octa-hedral coordination. Mg-O bond lengths range from 2.0526 (14) to 2.0965 (16) Å [mean value = 2.068 Å]. The pyridine and tetra-zole rings are nearly coplanar and only twisted from each other by a dihedral angle of 5.68 (1)°. The zwitterionic organic mol-ecules, anions and cations are connected by O-H⋯Cl, O-H⋯N and N-H⋯Cl hydrogen bonds, leading to the formation of a three-dimensional network.Entities:
Year: 2011 PMID: 21522848 PMCID: PMC3051589 DOI: 10.1107/S160053681005419X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C6H5N5)2[Mg(H2O)6]Cl2 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2552 reflections | |
| θ = 3.2–27.5° | |
| µ = 0.37 mm−1 | |
| α = 94.06 (3)° | |
| β = 90.71 (3)° | Block, colourless |
| γ = 110.67 (3)° | 0.40 × 0.05 × 0.05 mm |
| Rigaku SCXmini diffractometer | 2552 independent reflections |
| Radiation source: fine-focus sealed tube | 2086 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 3.2° |
| CCD_Profile_fitting scans | |
| Absorption correction: multi-scan ( | |
| 5836 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2552 reflections | (Δ/σ)max < 0.001 |
| 142 parameters | Δρmax = 0.27 e Å−3 |
| 6 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Mg1 | 0.0000 | 0.5000 | 0.5000 | 0.0313 (2) | |
| O1W | 0.0599 (2) | 0.69394 (16) | 0.36976 (13) | 0.0459 (4) | |
| H1WA | 0.0113 | 0.6775 | 0.2869 | 0.069* | |
| H1WB | 0.1228 | 0.7998 | 0.3859 | 0.069* | |
| O2W | 0.2487 (2) | 0.64382 (19) | 0.62087 (14) | 0.0528 (4) | |
| H2WA | 0.2766 | 0.6238 | 0.7025 | 0.079* | |
| H2WB | 0.3531 | 0.7163 | 0.5961 | 0.079* | |
| N2 | 0.2278 (2) | 0.46353 (18) | 0.10243 (15) | 0.0317 (3) | |
| C6 | 0.3333 (2) | 0.5845 (2) | 0.02382 (17) | 0.0263 (3) | |
| C2 | 0.4917 (2) | 0.7372 (2) | 0.07879 (18) | 0.0299 (4) | |
| N3 | 0.1006 (2) | 0.34796 (18) | 0.01273 (16) | 0.0357 (3) | |
| N4 | 0.1310 (2) | 0.39758 (19) | −0.11389 (16) | 0.0362 (4) | |
| N5 | 0.2776 (2) | 0.54786 (18) | −0.11105 (15) | 0.0336 (3) | |
| O3W | 0.1562 (2) | 0.3929 (2) | 0.37477 (15) | 0.0565 (4) | |
| H3WA | 0.1824 | 0.4149 | 0.2906 | 0.085* | |
| H3WB | 0.1934 | 0.3113 | 0.3914 | 0.085* | |
| C3 | 0.6097 (3) | 0.8510 (2) | −0.0093 (2) | 0.0370 (4) | |
| H3 | 0.5879 | 0.8315 | −0.1058 | 0.044* | |
| C1 | 0.5289 (3) | 0.7704 (2) | 0.2209 (2) | 0.0416 (5) | |
| H1 | 0.4520 | 0.6969 | 0.2821 | 0.050* | |
| N1 | 0.6760 (3) | 0.9086 (2) | 0.2710 (2) | 0.0528 (5) | |
| H1A | 0.6978 | 0.9268 | 0.3602 | 0.063* | |
| C4 | 0.7593 (3) | 0.9931 (2) | 0.0469 (3) | 0.0490 (5) | |
| H4 | 0.8379 | 1.0697 | −0.0117 | 0.059* | |
| C5 | 0.7908 (3) | 1.0201 (3) | 0.1877 (3) | 0.0543 (6) | |
| H5 | 0.8912 | 1.1151 | 0.2264 | 0.065* | |
| Cl1 | 0.31120 (8) | 0.08959 (6) | 0.40654 (6) | 0.05028 (17) |
| Mg1 | 0.0380 (5) | 0.0285 (4) | 0.0220 (4) | 0.0051 (3) | 0.0002 (3) | 0.0023 (3) |
| O1W | 0.0647 (9) | 0.0284 (7) | 0.0290 (7) | −0.0025 (6) | −0.0112 (6) | 0.0042 (5) |
| O2W | 0.0463 (8) | 0.0564 (9) | 0.0343 (7) | −0.0092 (7) | −0.0087 (6) | 0.0112 (6) |
| N2 | 0.0320 (7) | 0.0299 (7) | 0.0284 (7) | 0.0051 (6) | 0.0011 (6) | 0.0025 (6) |
| C6 | 0.0244 (8) | 0.0257 (8) | 0.0266 (8) | 0.0066 (6) | 0.0011 (6) | 0.0009 (6) |
| C2 | 0.0260 (8) | 0.0260 (8) | 0.0358 (9) | 0.0079 (7) | −0.0005 (7) | −0.0019 (7) |
| N3 | 0.0304 (8) | 0.0296 (8) | 0.0405 (9) | 0.0030 (6) | −0.0007 (6) | 0.0004 (6) |
| N4 | 0.0322 (8) | 0.0347 (8) | 0.0363 (8) | 0.0065 (6) | −0.0073 (6) | −0.0022 (6) |
| N5 | 0.0328 (8) | 0.0335 (8) | 0.0285 (8) | 0.0043 (6) | −0.0026 (6) | 0.0032 (6) |
| O3W | 0.0863 (12) | 0.0675 (10) | 0.0347 (8) | 0.0479 (9) | 0.0192 (8) | 0.0157 (7) |
| C3 | 0.0323 (9) | 0.0317 (9) | 0.0450 (11) | 0.0082 (8) | 0.0038 (8) | 0.0052 (8) |
| C1 | 0.0380 (10) | 0.0383 (10) | 0.0391 (10) | 0.0037 (8) | −0.0024 (8) | −0.0062 (8) |
| N1 | 0.0490 (10) | 0.0494 (11) | 0.0477 (10) | 0.0071 (8) | −0.0102 (8) | −0.0201 (8) |
| C4 | 0.0358 (10) | 0.0284 (10) | 0.0754 (16) | 0.0023 (8) | 0.0065 (10) | 0.0041 (9) |
| C5 | 0.0372 (11) | 0.0329 (11) | 0.0798 (17) | 0.0004 (9) | −0.0046 (11) | −0.0158 (10) |
| Cl1 | 0.0557 (3) | 0.0341 (3) | 0.0536 (3) | 0.0067 (2) | −0.0008 (2) | 0.0045 (2) |
| Mg1—O1W | 2.0526 (14) | C2—C3 | 1.393 (3) |
| Mg1—O1Wi | 2.0526 (14) | N3—N4 | 1.308 (2) |
| Mg1—O3Wi | 2.0552 (15) | N4—N5 | 1.346 (2) |
| Mg1—O3W | 2.0552 (15) | O3W—H3WA | 0.8500 |
| Mg1—O2W | 2.0965 (16) | O3W—H3WB | 0.8499 |
| Mg1—O2Wi | 2.0965 (16) | C3—C4 | 1.383 (3) |
| O1W—H1WA | 0.8500 | C3—H3 | 0.9300 |
| O1W—H1WB | 0.8499 | C1—N1 | 1.338 (2) |
| O2W—H2WA | 0.8500 | C1—H1 | 0.9300 |
| O2W—H2WB | 0.8499 | N1—C5 | 1.344 (3) |
| N2—C6 | 1.334 (2) | N1—H1A | 0.8600 |
| N2—N3 | 1.339 (2) | C4—C5 | 1.356 (3) |
| C6—N5 | 1.333 (2) | C4—H4 | 0.9300 |
| C6—C2 | 1.462 (2) | C5—H5 | 0.9300 |
| C2—C1 | 1.375 (3) | ||
| O1W—Mg1—O1Wi | 180.00 (5) | C1—C2—C3 | 118.19 (17) |
| O1W—Mg1—O3Wi | 91.30 (6) | C1—C2—C6 | 120.00 (16) |
| O1Wi—Mg1—O3Wi | 88.70 (6) | C3—C2—C6 | 121.80 (16) |
| O1W—Mg1—O3W | 88.70 (6) | N4—N3—N2 | 109.00 (14) |
| O1Wi—Mg1—O3W | 91.30 (6) | N3—N4—N5 | 110.09 (14) |
| O3Wi—Mg1—O3W | 180.000 (1) | C6—N5—N4 | 104.18 (14) |
| O1W—Mg1—O2W | 88.73 (6) | Mg1—O3W—H3WA | 124.6 |
| O1Wi—Mg1—O2W | 91.27 (6) | Mg1—O3W—H3WB | 127.9 |
| O3Wi—Mg1—O2W | 89.27 (7) | H3WA—O3W—H3WB | 107.1 |
| O3W—Mg1—O2W | 90.73 (7) | C4—C3—C2 | 120.02 (19) |
| O1W—Mg1—O2Wi | 91.27 (6) | C4—C3—H3 | 120.0 |
| O1Wi—Mg1—O2Wi | 88.73 (6) | C2—C3—H3 | 120.0 |
| O3Wi—Mg1—O2Wi | 90.73 (7) | N1—C1—C2 | 120.00 (19) |
| O3W—Mg1—O2Wi | 89.27 (7) | N1—C1—H1 | 120.0 |
| O2W—Mg1—O2Wi | 180.0 | C2—C1—H1 | 120.0 |
| Mg1—O1W—H1WA | 121.5 | C1—N1—C5 | 122.59 (19) |
| Mg1—O1W—H1WB | 130.3 | C1—N1—H1A | 118.7 |
| H1WA—O1W—H1WB | 107.9 | C5—N1—H1A | 118.7 |
| Mg1—O2W—H2WA | 125.4 | C5—C4—C3 | 119.6 (2) |
| Mg1—O2W—H2WB | 129.5 | C5—C4—H4 | 120.2 |
| H2WA—O2W—H2WB | 103.6 | C3—C4—H4 | 120.2 |
| C6—N2—N3 | 105.15 (14) | N1—C5—C4 | 119.60 (18) |
| N5—C6—N2 | 111.57 (14) | N1—C5—H5 | 120.2 |
| N5—C6—C2 | 124.30 (15) | C4—C5—H5 | 120.2 |
| N2—C6—C2 | 124.13 (15) |
| H··· | ||||
| O1W—H1WA···N4ii | 0.85 | 1.90 | 2.737 (2) | 169 |
| O1W—H1WB···Cl1iii | 0.85 | 2.34 | 3.1848 (17) | 174 |
| O2W—H2WA···N5iv | 0.85 | 1.94 | 2.775 (2) | 167 |
| O2W—H2WB···Cl1v | 0.85 | 2.46 | 3.2764 (19) | 163 |
| N1—H1A···Cl1v | 0.86 | 2.25 | 3.088 (2) | 165 |
| O3W—H3WA···N2 | 0.85 | 1.89 | 2.735 (2) | 177 |
| O3W—H3WB···Cl1 | 0.85 | 2.34 | 3.1822 (17) | 172 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.85 | 1.90 | 2.737 (2) | 169 |
| O1 | 0.85 | 2.34 | 3.1848 (17) | 174 |
| O2 | 0.85 | 1.94 | 2.775 (2) | 167 |
| O2 | 0.85 | 2.46 | 3.2764 (19) | 163 |
| N1—H1 | 0.86 | 2.25 | 3.088 (2) | 165 |
| O3 | 0.85 | 1.89 | 2.735 (2) | 177 |
| O3 | 0.85 | 2.34 | 3.1822 (17) | 172 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .