| Literature DB >> 30219045 |
Zhihua Yin1, Zhigang Cui2, Hang Li1, Juan Li1, Baosen Zhou3.
Abstract
BACKGROUND: Long non-coding RNA (lncRNA) H19 is a hot spot in tumor development, progression and metastasis. This study assessed the association between H19 genetic polymorphisms and the susceptibility of lung cancer.Entities:
Keywords: Cooking oil fume; H19; Interaction; Lung cancer; Single nucleotide polymorphism
Mesh:
Substances:
Year: 2018 PMID: 30219045 PMCID: PMC6139161 DOI: 10.1186/s12885-018-4795-6
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Association between H19 SNPs and lung cancer risks
| H19 | Controls (%) | Cases (%) | OR (95% CI) | OR (95% CI)* | |||
|---|---|---|---|---|---|---|---|
| rs217727 | CC | 165(41.8) | 204(36.7) | 1.00(ref) | 1.00(ref) | ||
| CT | 172(43.5) | 264(47.5) | 1.241(0.937–1.644) | 0.132 | 1.247(0.941–1.652) | 0.124 | |
| TT | 58(14.7) | 88(15.8) | 1.227(0.831–1.812) | 0.303 | 1.229(0.832–1.816) | 0.300 | |
| CT + TT vs CC | 1.238(0.951–1.612) | 0.113 | 1.243(0.954–1.618) | 0.107 | |||
| TT vs CT + CC | 1.093(0.762–1.566) | 0.630 | 1.092(0.762–1.565) | 0.632 | |||
| C allele | 502(63.5) | 672(60.4) | 1.00(ref) | ||||
| T allele | 288(36.5) | 440(39.6) | 1.141(0.945–1.378) | 0.169 | |||
| rs2107425 | CC | 140(35.4) | 161(29.0) | 1.00(ref) | 1.00(ref) | ||
| CT | 185(46.8) | 266(47.8) | 1.250(0.932–1.678) | 0.137 | 1.251(0.932–1.678) | 0.136 | |
| TT | 70(17.7) | 129(23.2) | 1.602(1.108–2.317) | 0.012 | 1.599(1.106–2.313) | 0.013 | |
| CT + TT vs CC | 1.347(1.022–1.775) | 0.034 | 1.346(1.022–1.774) | 0.035 | |||
| CC vs CT + TT | 1.403(1.014–1.941) | 0.041 | 1.400(1.011–1.937) | 0.043 | |||
| C allele | 465(58.8) | 588(52.9) | 1.00(ref) | ||||
| T allele | 325(41.1) | 524(47.1) | 1.275(1.060–1.533) | 0.010 | |||
| rs2735469 | CC | 359(90.9) | 507(91.2) | 1.00(ref) | 1.00(ref) | ||
| CT | 36(9.1) | 46(8.3) | 0.905(0.573–1.428) | 0.668 | 0.902(0.571–1.425) | 0.659 | |
| TT | 0(0) | 3(0.5) | # | # | # | # | |
| CT + TT vs CC | 0.964(0.614–1.513) | 0.873 | 0.962(0.613–1.510) | 0.866 | |||
| TT vs CC + CT | # | # | # | # | |||
| C allele | 754(95.4) | 1060(95.3) | 1.00(ref) | ||||
| T allele | 36(4.6) | 52(4.7) | 1.027(0.665–1.588) | 0.930 | |||
| rs17658052 | GG | 371(93.9) | 507(91.2) | 1.00(ref) | 1.00(ref) | ||
| AG | 24(6.1) | 47(8.5) | 1.433(0.861–2.386) | 0.166 | 1.419(0.852–2.365) | 0.179 | |
| AA | 0(0.0) | 2(0.4) | # | # | # | # | |
| AG + AA vs GG | 1.494(0.900–2.479) | 0.120 | 1.479(0.890–2.455) | 0.131 | |||
| AA vs GG + AG | # | # | # | # | |||
| G allele | 766(97.0) | 1061(95.4) | 1.00(ref) | ||||
| A allele | 24(3.0) | 51(4.6) | 1.534(0.936–2.514) | 0.087 |
*: adjusted by age. #: could not be calculated
Association between H19 SNPs and risks of lung adenocarcinoma and squamous cell lung cancer
| H19 | Controls (%) | Lung Adenocarcinoma | Squamous cell lung cancer | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cases (%) | OR (95% CI) | P value | OR (95% CI)* | Cases (%) | OR (95% CI) | OR (95% CI)* | ||||||
| rs217727 | CC | 165(41.8) | 141(38.0) | 1.00(ref) | 1.00(ref) | 35(36.5) | 1.00(ref) | 1.00(ref) | ||||
| CT | 172(43.5) | 169(45.6) | 1.150(0.844–1.566) | 0.376 | 1.152(0.846–1.570) | 0.369 | 45(46.9) | 1.233(0.755–2.015) | 0.402 | 1.236(0.756–2.022) | 0.399 | |
| TT | 58(14.7) | 61(16.4) | 1.231(0.805–1.881) | 0.337 | 1.231(0.806–1.881) | 0.337 | 16(16.7) | 1.300(0.670–2.523) | 0.437 | 1.315(0.676–2.556) | 0.420 | |
| CT + TT vs CC | 1.170(0.876–1.563) | 0.288 | 1.172(0.877–1.566) | 0.283 | 1.250(0.788–1.983) | 0.342 | 1.256(0.791–1.994) | 0.335 | ||||
| TT vs CT + CC | 1.143(0.773–1.691) | 0.502 | 1.142(0.773–1.689) | 0.505 | 1.162(0.635–2.128) | 0.626 | 1.173(0.640–2.153) | 0.605 | ||||
| C allele | 502(63.5) | 451(60.8) | 1.00(ref) | 115(59.9) | 1.00(ref) | |||||||
| T allele | 288(36.5) | 291(39.2) | 1.125(0.915–1.383) | 0.265 | 77(3.6) | 1.167(0.845–1.612) | 0.384 | |||||
| rs2107425 | CC | 140(35.4) | 111(29.9) | 1.00(ref) | 1.00(ref) | 27(28.1) | 1.00(ref) | 1.00(ref) | ||||
| CT | 185(46.8) | 171(46.1) | 1.166(0.843–1.613) | 0.354 | 1.166(0.843–1.613) | 0.354 | 43(44.8) | 1.205(0.710–2.045) | 0.489 | 1.183(0.696–2.011) | 0.536 | |
| TT | 70(17.7) | 89(24.0) | 1.604(1.075–2.393) | 0.021 | 1.602(1.074–2.390) | 0.021 | 26(27.1) | 1.926(1.046–3.545) | 0.035 | 1.935(1.049–3.570) | 0.035 | |
| CT + TT vs CC | 1.286(0.950–1.741) | 0.104 | 1.286(0.949–1.741) | 0.104 | 1.403(0.859–2.291) | 0.176 | 1.387(0.848–2.268) | 0.192 | ||||
| CC vs CT + TT | 1.465(1.031–2.082) | 0.033 | 1.464(1.030–2.080) | 0.034 | 1.724(1.026–2.898) | 0.040 | 1.752(1.040–2.952) | 0.035 | ||||
| C allele | 465(58.9) | 393(53.0) | 1.00(ref) | 97(50.5) | 1.00(ref) | |||||||
| T allele | 325(41.1) | 349(47.0) | 1.271(1.038–1.555) | 0.020 | 95(49.5) | 1.401(1.021–1.923) | 0.036 | |||||
| rs2735469 | CC | 359(90.9) | 340(91.6) | 1.00(ref) | 1.00(ref) | 89(92.7) | 1.00(ref) | 1.00(ref) | ||||
| CT | 36(9.1) | 29(7.8) | 0.851(0.510–1.418) | 0.535 | 0.851(0.510–1.418) | 0.535 | 6(6.3) | 0.672(0.275–1.645) | 0.384 | 0.662(0.270–1.624) | 0.368 | |
| TT | 0(0) | 2(0.5) | # | # | # | # | 1(1.0) | # | # | # | # | |
| CT + TT vs CC | 0.909(0.550–1.503) | 0.711 | 0.910(0.550–1.504) | 0.712 | 0.784(0.338–1.821) | 0.572 | 0.775(0.333–1.803) | 0.554 | ||||
| TT vs CC + CT | # | # | # | # | # | # | # | # | ||||
| C allele | 754(95.4) | 709(95.6) | 1.00(ref) | 184(95.8) | 1.00(ref) | |||||||
| T allele | 36(4.6) | 33(4.4) | 0.975(0.601–1.581) | 0.918 | 8(4.2) | 0.911(0.416–1.992) | 0.815 | |||||
| rs17658052 | GG | 371(93.9) | 343(92.4) | 1.00(ref) | 1.00(ref) | 82(85.4) | 1.00(ref) | 1.00(ref) | ||||
| AG | 24(6.1) | 27(7.3) | 1.217(0.689–2.150) | 0.499 | 1.212(0.685–2.142) | 0.509 | 13(13.5) | 2.451(1.198–5.015) | 0.014 | 2.411(1.175–4.946) | 0.016 | |
| AA | 0(0.0) | 1(0.3) | # | # | # | # | 1(1.0) | # | # | # | # | |
| AG + AA vs GG | 1.262(0.717–2.219) | 0.419 | 1.256(0.714–2.211) | 0.429 | 2.639(1.309–5.321) | 0.007 | 2.587(1.279–5.229) | 0.008 | ||||
| AA vs GG + AG | # | # | # | # | # | # | # | # | ||||
| G allele | 766(96.9) | 713(96.1) | 1.00(ref) | 0.410 | 177(92.2) | 1.00(ref) | ||||||
| A allele | 24(3.0) | 29(3.9) | 1.298(0.749–2.251) | 0.352 | 15(7.8) | 2.705(1.390–5.262) | 0.002 | |||||
*: adjusted by age
#: could not be calculated
Combined effects of H19 SNPs and cooking oil fume exposure on lung cancer risk
| SNP | Oil | Controls (%) | Cases (%) | OR (95%CI) | ||
|---|---|---|---|---|---|---|
| rs217727 | CC | Non-exposure | 86(32.3) | 59(22.0) | 1(ref) | |
| CT + TT | Non-exposure | 114(42.9) | 109(40.7) | 1.373(0.898–2.098) | 0.143 | |
| CC | Exposure | 27(10.2) | 36(13.4) | 1.921(1.055–3.501) | 0.033 | |
| CT + TT | Exposure | 39(14.6) | 64(23.9) | 2.368(1.409–3.978) | 0.001 | |
| rs2107425 | CC | Non-exposure | 70(26.3) | 43(16.0) | 1(ref) | |
| CT + TT | Non-exposure | 130(48.9) | 125(46.6) | 1.550(0.985–2.439) | 0.058 | |
| CC | Exposure | 25(9.4) | 29(10.8) | 1.852(0.960–3.575) | 0.066 | |
| CT + TT | Exposure | 41(15.4) | 71(26.5) | 2.811(1.636–4.830) | < 0.001 | |
| rs2735469 | CT + TT | Non-exposure | 18(6.8) | 10(3.7) | 1(ref) | |
| CC | Non-exposure | 182(68.4) | 158(59.0) | 1.548(0.693–3.455) | 0.286 | |
| CT + TT | Exposure | 9(3.4) | 7(2.6) | 1.388(0.395–4.876) | 0.609 | |
| CC | Exposure | 57(21.4) | 93(34.7) | 2.906(1.253–6.744) | 0.013 | |
| rs17658052 | GG | Non-exposure | 188(70.7) | 150(56.0) | 1(ref) | |
| GA + AA | Non-exposure | 12(4.5) | 18 (6.7) | 1.900(0.887–4.073) | 0.099 | |
| GG | Exposure | 62(23.3) | 94(35.1) | 1.897(1.289–2.792) | 0.001 | |
| GA + AA | Exposure | 4(1.5) | 6(2.2) | 1.920(0.531–6.948) | 0.320 |
*: adjusted by age
Combined effects of H19 SNPs and cooking oil fume exposure on lung adenocarcinoma risk
| SNP | Oil | Controls (%) | Cases (%) | OR (95%CI)* | ||
|---|---|---|---|---|---|---|
| rs217727 | CC | Non-exposure | 86(32.3) | 49(24.9) | 1(ref) | |
| CT + TT | Non-exposure | 114(42.9) | 77 (39.1) | 1.180(0.748–1.859) | 0.477 | |
| CC | Exposure | 27(10.2) | 23(11.7) | 1.480(0.766–2.859) | 0.243 | |
| CT + TT | Exposure | 39(14.6) | 48(24.4) | 2.147(1.239–3.721) | 0.006 | |
| rs2107425 | CC | Non-exposure | 70(26.3) | 36(18.3) | 1(ref) | |
| CT + TT | Non-exposure | 130(48.9) | 90(45.7) | 1.342(0.827–2.177) | 0.233 | |
| CC | Exposure | 25(9.4) | 21(10.7) | 1.614(0.796–3.273) | 0.184 | |
| CT + TT | Exposure | 41(15.4) | 50(25.4) | 2.362(1.327–4.204) | 0.003 | |
| rs2735469 | CT + TT | Non-exposure | 18(6.8) | 7(3.6) | 1(ref) | |
| CC | Non-exposure | 182(68.4) | 119(60.4) | 1.679(0.680–4.145) | 0.261 | |
| CT + TT | Exposure | 9(3.4) | 6(3.0) | 1.697(0.438–6.570) | 0.444 | |
| CC | Exposure | 57(21.4) | 65(33.0) | 2.917(1.136–7.492) | 0.026 | |
| rs17658052 | GG | Non-exposure | 188(70.7) | 114(57.9) | 1(ref) | |
| GA + GG | Non-exposure | 12(4.5) | 12 (6.1) | 1.647(0.716–3.791) | 0.241 | |
| GG | Exposure | 62(23.3) | 68(34.5) | 1.798(1.186–2.725) | 0.006 | |
| GA + AA | Exposure | 4(1.5) | 3(1.5) | 1.268(0.278–5.781) | 0.759 |
*: adjusted by age
Measures of additive interaction between H19 SNPs and cooking oil fume exposure
| SNP | Measure | Lung cancer | Lung adenocarcinoma | ||
|---|---|---|---|---|---|
| Estimate | 95% CI | Estimate | 95% CI | ||
| rs217727 | RERI | 0.074 | −1.354-1.502 | 0.488 | −0.797-1.773 |
| AP | 0.031 | −0.566-0.628 | 0.227 | −0.326-0.780 | |
| S | 1.057 | 0.357–3.129 | 1.740 | 0.305–9.926 | |
| rs2107425 | RERI | 0.409 | −1.127-1.944 | 0.405 | −1.016-1.826 |
| AP | 0.145 | −0.374-0.665 | 0.172 | −0.401-0.744 | |
| S | 1.291 | 0.465–3.589 | 1.424 | 0.357–5.683 | |
| rs2735469 | RERI | 0.970 | −0.738-2.679 | 0.541 | −1.573-2.654 |
| AP | 0.334 | −0.262-0.930 | 0.185 | −0.588-0.929 | |
| S | 2.037 | 0.270–15.387 | 1.393 | 0.273–7.113 | |
| rs17658052 | RERI | −0.877 | −3.773-2.020 | −1.177 | −3.626-1.272 |
| AP | −0.456 | −2.468-1.555 | −0.928 | −4.045-2.189 | |
| S | 0.512 | 0.032–8.226 | 0.1864 | 0.000–244.516 | |