Literature DB >> 28082593

Assembly of a nucleus-like structure during viral replication in bacteria.

Vorrapon Chaikeeratisak1, Katrina Nguyen1, Kanika Khanna1, Axel F Brilot2, Marcella L Erb1, Joanna K C Coker1, Anastasia Vavilina1, Gerald L Newton1, Robert Buschauer3, Kit Pogliano1, Elizabeth Villa3, David A Agard2, Joe Pogliano4.   

Abstract

We observed the assembly of a nucleus-like structure in bacteria during viral infection. Using fluorescence microscopy and cryo-electron tomography, we showed that Pseudomonas chlororaphis phage 201φ2-1 assembled a compartment that separated viral DNA from the cytoplasm. The phage compartment was centered by a bipolar tubulin-based spindle, and it segregated phage and bacterial proteins according to function. Proteins involved in DNA replication and transcription localized inside the compartment, whereas proteins involved in translation and nucleotide synthesis localized outside. Later during infection, viral capsids assembled on the cytoplasmic membrane and moved to the surface of the compartment for DNA packaging. Ultimately, viral particles were released from the compartment and the cell lysed. These results demonstrate that phages have evolved a specialized structure to compartmentalize viral replication.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 28082593      PMCID: PMC6028185          DOI: 10.1126/science.aal2130

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  11 in total

1.  Improved isolation of undersampled bacteriophages: finding of distant terminase genes.

Authors:  Philip Serwer; Shirley J Hayes; Shehnaz Zaman; Karen Lieman; Mandy Rolando; Stephen C Hardies
Journal:  Virology       Date:  2004-11-24       Impact factor: 3.616

Review 2.  Opening windows into the cell: focused-ion-beam milling for cryo-electron tomography.

Authors:  Elizabeth Villa; Miroslava Schaffer; Jürgen M Plitzko; Wolfgang Baumeister
Journal:  Curr Opin Struct Biol       Date:  2013-09-30       Impact factor: 6.809

3.  Characterization of Pseudomonas chlororaphis myovirus 201varphi2-1 via genomic sequencing, mass spectrometry, and electron microscopy.

Authors:  Julie A Thomas; Mandy R Rolando; Christopher A Carroll; Peter S Shen; David M Belnap; Susan T Weintraub; Philip Serwer; Stephen C Hardies
Journal:  Virology       Date:  2008-05-13       Impact factor: 3.616

4.  Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level.

Authors:  A L McCormack; D M Schieltz; B Goode; S Yang; G Barnes; D Drubin; J R Yates
Journal:  Anal Chem       Date:  1997-02-15       Impact factor: 6.986

Review 5.  A new view into prokaryotic cell biology from electron cryotomography.

Authors:  Catherine M Oikonomou; Yi-Wei Chang; Grant J Jensen
Journal:  Nat Rev Microbiol       Date:  2016-02-29       Impact factor: 60.633

6.  Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors.

Authors:  Andrew C Paoletti; Tari J Parmely; Chieri Tomomori-Sato; Shigeo Sato; Dongxiao Zhu; Ronald C Conaway; Joan Weliky Conaway; Laurence Florens; Michael P Washburn
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-30       Impact factor: 11.205

7.  Interactions of the NPXY microdomains of the low density lipoprotein receptor-related protein 1.

Authors:  Miklos Guttman; Gina N Betts; Helen Barnes; Majid Ghassemian; Peter van der Geer; Elizabeth A Komives
Journal:  Proteomics       Date:  2009-11       Impact factor: 3.984

8.  A phage tubulin assembles dynamic filaments by an atypical mechanism to center viral DNA within the host cell.

Authors:  James A Kraemer; Marcella L Erb; Christopher A Waddling; Elizabeth A Montabana; Elena A Zehr; Hannah Wang; Katrina Nguyen; Duy Stephen L Pham; David A Agard; Joe Pogliano
Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

9.  The structure and assembly mechanism of a novel three-stranded tubulin filament that centers phage DNA.

Authors:  Elena A Zehr; James A Kraemer; Marcella L Erb; Joanna K C Coker; Elizabeth A Montabana; Joe Pogliano; David A Agard
Journal:  Structure       Date:  2014-03-13       Impact factor: 5.006

Review 10.  Viruses and cells intertwined since the dawn of evolution.

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Journal:  Virol J       Date:  2015-10-16       Impact factor: 4.099

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  57 in total

1.  Viral Symbiosis in the Origins and Evolution of Life with a Particular Focus on the Placental Mammals.

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Journal:  Results Probl Cell Differ       Date:  2020

2.  Self-Assembly of Metallacages into Multidimensional Suprastructures with Tunable Emissions.

Authors:  Yan Sun; Yong Yao; Heng Wang; Wenxin Fu; Chongyi Chen; Manik Lal Saha; Mingming Zhang; Sougata Datta; Zhixuan Zhou; Huaxu Yu; Xiaopeng Li; Peter J Stang
Journal:  J Am Chem Soc       Date:  2018-09-27       Impact factor: 15.419

Review 3.  Examining horizontal gene transfer in microbial communities.

Authors:  Ilana Lauren Brito
Journal:  Nat Rev Microbiol       Date:  2021-04-12       Impact factor: 60.633

4.  Formation of a Viral Replication Focus in Sulfolobus Cells Infected by the Rudivirus Sulfolobus islandicus Rod-Shaped Virus 2.

Authors:  Laura Martínez-Alvarez; Ling Deng; Xu Peng
Journal:  J Virol       Date:  2017-06-09       Impact factor: 5.103

Review 5.  States of phage T3/T7 capsids: buoyant density centrifugation and cryo-EM.

Authors:  Philip Serwer; Elena T Wright; Borries Demeler; Wen Jiang
Journal:  Biophys Rev       Date:  2017-12-14

6.  A jumbo phage that forms a nucleus-like structure evades CRISPR-Cas DNA targeting but is vulnerable to type III RNA-based immunity.

Authors:  Lucia M Malone; Suzanne L Warring; Simon A Jackson; Carolin Warnecke; Paul P Gardner; Laura F Gumy; Peter C Fineran
Journal:  Nat Microbiol       Date:  2019-12-09       Impact factor: 17.745

Review 7.  Cryo-electron microscopy for the study of virus assembly.

Authors:  Daniel Luque; José R Castón
Journal:  Nat Chem Biol       Date:  2020-02-20       Impact factor: 15.040

8.  Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography.

Authors:  Felix R Wagner; Reika Watanabe; Ruud Schampers; Digvijay Singh; Hans Persoon; Miroslava Schaffer; Peter Fruhstorfer; Jürgen Plitzko; Elizabeth Villa
Journal:  Nat Protoc       Date:  2020-05-13       Impact factor: 13.491

9.  The Phage Nucleus and Tubulin Spindle Are Conserved among Large Pseudomonas Phages.

Authors:  Vorrapon Chaikeeratisak; Katrina Nguyen; MacKennon E Egan; Marcella L Erb; Anastasia Vavilina; Joe Pogliano
Journal:  Cell Rep       Date:  2017-08-15       Impact factor: 9.423

Review 10.  Virus capsid assembly across different length scales inspire the development of virus-based biomaterials.

Authors:  Ekaterina Selivanovitch; Trevor Douglas
Journal:  Curr Opin Virol       Date:  2019-05-06       Impact factor: 7.090

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