Literature DB >> 32549051

Confounder-Aware Visualization of ConvNets.

Qingyu Zhao1, Ehsan Adeli1, Adolf Pfefferbaum1,2, Edith V Sullivan1, Kilian M Pohl1,2.   

Abstract

With recent advances in deep learning, neuroimaging studies increasingly rely on convolutional networks (ConvNets) to predict diagnosis based on MR images. To gain a better understanding of how a disease impacts the brain, the studies visualize the salience maps of the ConvNet highlighting voxels within the brain majorly contributing to the prediction. However, these salience maps are generally confounded, i.e., some salient regions are more predictive of confounding variables (such as age) than the diagnosis. To avoid such misinterpretation, we propose in this paper an approach that aims to visualize confounder-free saliency maps that only highlight voxels predictive of the diagnosis. The approach incorporates univariate statistical tests to identify confounding effects within the intermediate features learned by ConvNet. The influence from the subset of confounded features is then removed by a novel partial back-propagation procedure. We use this two-step approach to visualize confounder-free saliency maps extracted from synthetic and two real datasets. These experiments reveal the potential of our visualization in producing unbiased model-interpretation.

Entities:  

Year:  2019        PMID: 32549051      PMCID: PMC7297409          DOI: 10.1007/978-3-030-32692-0_38

Source DB:  PubMed          Journal:  Mach Learn Med Imaging


  9 in total

1.  Development of cortical and subcortical brain structures in childhood and adolescence: a structural MRI study.

Authors:  Elizabeth R Sowell; Doris A Trauner; Anthony Gamst; Terry L Jernigan
Journal:  Dev Med Child Neurol       Date:  2002-01       Impact factor: 5.449

2.  Chained regularization for identifying brain patterns specific to HIV infection.

Authors:  Ehsan Adeli; Dongjin Kwon; Qingyu Zhao; Adolf Pfefferbaum; Natalie M Zahr; Edith V Sullivan; Kilian M Pohl
Journal:  Neuroimage       Date:  2018-08-21       Impact factor: 6.556

3.  The significance of age-related enlargement of the cerebral ventricles in healthy men and women measured by quantitative computed X-ray tomography.

Authors:  J A Kaye; C DeCarli; J S Luxenberg; S I Rapoport
Journal:  J Am Geriatr Soc       Date:  1992-03       Impact factor: 5.562

4.  The National Consortium on Alcohol and NeuroDevelopment in Adolescence (NCANDA): A Multisite Study of Adolescent Development and Substance Use.

Authors:  Sandra A Brown; Ty Brumback; Kristin Tomlinson; Kevin Cummins; Wesley K Thompson; Bonnie J Nagel; Michael D De Bellis; Stephen R Hooper; Duncan B Clark; Tammy Chung; Brant P Hasler; Ian M Colrain; Fiona C Baker; Devin Prouty; Adolf Pfefferbaum; Edith V Sullivan; Kilian M Pohl; Torsten Rohlfing; B Nolan Nichols; Weiwei Chu; Susan F Tapert
Journal:  J Stud Alcohol Drugs       Date:  2015-11       Impact factor: 2.582

Review 5.  The practical implementation of artificial intelligence technologies in medicine.

Authors:  Jianxing He; Sally L Baxter; Jie Xu; Jiming Xu; Xingtao Zhou; Kang Zhang
Journal:  Nat Med       Date:  2019-01-07       Impact factor: 53.440

Review 6.  High-performance medicine: the convergence of human and artificial intelligence.

Authors:  Eric J Topol
Journal:  Nat Med       Date:  2019-01-07       Impact factor: 53.440

7.  Increased brain-predicted aging in treated HIV disease.

Authors:  James H Cole; Jonathan Underwood; Matthan W A Caan; Davide De Francesco; Rosan A van Zoest; Robert Leech; Ferdinand W N M Wit; Peter Portegies; Gert J Geurtsen; Ben A Schmand; Maarten F Schim van der Loeff; Claudio Franceschi; Caroline A Sabin; Charles B L M Majoie; Alan Winston; Peter Reiss; David J Sharp
Journal:  Neurology       Date:  2017-03-03       Impact factor: 9.910

8.  Alcohol use effects on adolescent brain development revealed by simultaneously removing confounding factors, identifying morphometric patterns, and classifying individuals.

Authors:  Sang Hyun Park; Yong Zhang; Dongjin Kwon; Qingyu Zhao; Natalie M Zahr; Adolf Pfefferbaum; Edith V Sullivan; Kilian M Pohl
Journal:  Sci Rep       Date:  2018-05-29       Impact factor: 4.379

9.  How to control confounding effects by statistical analysis.

Authors:  Mohamad Amin Pourhoseingholi; Ahmad Reza Baghestani; Mohsen Vahedi
Journal:  Gastroenterol Hepatol Bed Bench       Date:  2012
  9 in total
  4 in total

1.  Spatio-Temporal Graph Convolution for Resting-State fMRI Analysis.

Authors:  Soham Gadgil; Qingyu Zhao; Adolf Pfefferbaum; Edith V Sullivan; Ehsan Adeli; Kilian M Pohl
Journal:  Med Image Comput Comput Assist Interv       Date:  2020-09-29

2.  Representation Disentanglement for Multi-modal Brain MRI Analysis.

Authors:  Jiahong Ouyang; Ehsan Adeli; Kilian M Pohl; Qingyu Zhao; Greg Zaharchuk
Journal:  Inf Process Med Imaging       Date:  2021-06-14

3.  Longitudinal Pooling & Consistency Regularization to Model Disease Progression From MRIs.

Authors:  Jiahong Ouyang; Qingyu Zhao; Edith V Sullivan; Adolf Pfefferbaum; Susan F Tapert; Ehsan Adeli; Kilian M Pohl
Journal:  IEEE J Biomed Health Inform       Date:  2021-06-11       Impact factor: 7.021

4.  Training confounder-free deep learning models for medical applications.

Authors:  Qingyu Zhao; Ehsan Adeli; Kilian M Pohl
Journal:  Nat Commun       Date:  2020-11-26       Impact factor: 14.919

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.