Literature DB >> 33464541

Machine learning prediction of neurocognitive impairment among people with HIV using clinical and multimodal magnetic resonance imaging data.

Yunan Xu1, Yizi Lin2, Ryan P Bell3, Sheri L Towe3, John M Pearson4,5,6, Tauseef Nadeem3, Cliburn Chan5, Christina S Meade3.   

Abstract

Diagnosis of HIV-associated neurocognitive impairment (NCI) continues to be a clinical challenge. The purpose of this study was to develop a prediction model for NCI among people with HIV using clinical- and magnetic resonance imaging (MRI)-derived features. The sample included 101 adults with chronic HIV disease. NCI was determined using a standardized neuropsychological testing battery comprised of seven domains. MRI features included gray matter volume from high-resolution anatomical scans and white matter integrity from diffusion-weighted imaging. Clinical features included demographics, substance use, and routine laboratory tests. Least Absolute Shrinkage and Selection Operator Logistic regression was used to perform variable selection on MRI features. These features were subsequently used to train a support vector machine (SVM) to predict NCI. Three different classification tasks were performed: one used only clinical features; a second used only selected MRI features; a third used both clinical and selected MRI features. Model performance was evaluated by area under the receiver operating characteristic curve (AUC), accuracy, sensitivity, and specificity with a tenfold cross-validation. The SVM classifier that combined selected MRI with clinical features outperformed the model using clinical features or MRI features alone (AUC: 0.83 vs. 0.62 vs. 0.79; accuracy: 0.80 vs. 0.65 vs. 0.72; sensitivity: 0.86 vs. 0.85 vs. 0.86; specificity: 0.71 vs. 0.37 vs. 0.52). Our results provide preliminary evidence that combining clinical and MRI features can increase accuracy in predicting NCI and could be developed as a potential tool for NCI diagnosis in HIV clinical practice.

Entities:  

Keywords:  MRI; Machine learning; Neurocognitive impairment; People with HIV; Prediction

Mesh:

Year:  2021        PMID: 33464541      PMCID: PMC8001877          DOI: 10.1007/s13365-020-00930-4

Source DB:  PubMed          Journal:  J Neurovirol        ISSN: 1355-0284            Impact factor:   2.643


  44 in total

1.  Predictive validity of global deficit scores in detecting neuropsychological impairment in HIV infection.

Authors:  Catherine L Carey; Steven Paul Woods; Raul Gonzalez; Emily Conover; Thomas D Marcotte; Igor Grant; Robert K Heaton
Journal:  J Clin Exp Neuropsychol       Date:  2004-05       Impact factor: 2.475

2.  Updated research nosology for HIV-associated neurocognitive disorders.

Authors:  A Antinori; G Arendt; J T Becker; B J Brew; D A Byrd; M Cherner; D B Clifford; P Cinque; L G Epstein; K Goodkin; M Gisslen; I Grant; R K Heaton; J Joseph; K Marder; C M Marra; J C McArthur; M Nunn; R W Price; L Pulliam; K R Robertson; N Sacktor; V Valcour; V E Wojna
Journal:  Neurology       Date:  2007-10-03       Impact factor: 9.910

3.  Chained regularization for identifying brain patterns specific to HIV infection.

Authors:  Ehsan Adeli; Dongjin Kwon; Qingyu Zhao; Adolf Pfefferbaum; Natalie M Zahr; Edith V Sullivan; Kilian M Pohl
Journal:  Neuroimage       Date:  2018-08-21       Impact factor: 6.556

4.  Morning or evening activity improves neuropsychological performance and subjective sleep quality in older adults.

Authors:  Susan Benloucif; Larry Orbeta; Rosemary Ortiz; Imke Janssen; Sanford I Finkel; Joseph Bleiberg; Phyllis C Zee
Journal:  Sleep       Date:  2004-12-15       Impact factor: 5.849

5.  Impaired Neurocognitive Performance and Mortality in HIV: Assessing the Prognostic Value of the HIV-Dementia Scale.

Authors:  Nikhil Banerjee; Roger C McIntosh; Gail Ironson
Journal:  AIDS Behav       Date:  2019-12

6.  Novel Machine Learning Identifies Brain Patterns Distinguishing Diagnostic Membership of Human Immunodeficiency Virus, Alcoholism, and Their Comorbidity of Individuals.

Authors:  Ehsan Adeli; Natalie M Zahr; Adolf Pfefferbaum; Edith V Sullivan; Kilian M Pohl
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2019-03-01

7.  Risk factors for hospitalization and medical intensive care unit (MICU) admission among HIV-infected Veterans.

Authors:  Kathleen M Akgün; Kirsha Gordon; Margaret Pisani; Terri Fried; Kathleen A McGinnis; Janet P Tate; Adeel A Butt; Cynthia L Gibert; Laurence Huang; Maria C Rodriguez-Barradas; David Rimland; Amy C Justice; Kristina Crothers
Journal:  J Acquir Immune Defic Syndr       Date:  2013-01-01       Impact factor: 3.731

8.  Automated diagnosis of HIV-associated neurocognitive disorders using large-scale Granger causality analysis of resting-state functional MRI.

Authors:  Udaysankar Chockanathan; Adora M DSouza; Anas Z Abidin; Giovanni Schifitto; Axel Wismüller
Journal:  Comput Biol Med       Date:  2019-01-15       Impact factor: 4.589

9.  Prevalence of HIV Associated Neurocognitive Deficit among HIV Positive People in Ethiopia: A Cross Sectional Study at Ayder Referral Hospital.

Authors:  Tilahun Belete; Girmaw Medfu; Ephrem Yemiyamrew
Journal:  Ethiop J Health Sci       Date:  2017-01

10.  A diffusion-matched principal component analysis (DM-PCA) based two-channel denoising procedure for high-resolution diffusion-weighted MRI.

Authors:  Nan-Kuei Chen; Hing-Chiu Chang; Ali Bilgin; Adam Bernstein; Theodore P Trouard
Journal:  PLoS One       Date:  2018-04-25       Impact factor: 3.752

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  2 in total

1.  Multi-label, multi-domain learning identifies compounding effects of HIV and cognitive impairment.

Authors:  Jiequan Zhang; Qingyu Zhao; Ehsan Adeli; Adolf Pfefferbaum; Edith V Sullivan; Robert Paul; Victor Valcour; Kilian M Pohl
Journal:  Med Image Anal       Date:  2021-10-13       Impact factor: 8.545

2.  Multimodal magnetic resonance neuroimaging measures characteristic of early cART-treated pediatric HIV: A feature selection approach.

Authors:  Isaac L Khobo; Marcin Jankiewicz; Martha J Holmes; Francesca Little; Mark F Cotton; Barbara Laughton; Andre J W van der Kouwe; Allison Moreau; Emmanuel Nwosu; Ernesta M Meintjes; Frances C Robertson
Journal:  Hum Brain Mapp       Date:  2022-05-16       Impact factor: 5.399

  2 in total

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