| Literature DB >> 30120382 |
Quan V Vo1,2, Pham Cam Nam3, Mai Van Bay4, Nguyen Minh Thong5, Nguyen Duc Cuong6, Adam Mechler7.
Abstract
Antioxidants are a diverse group of chemicals with proven health benefits and thus potential preventive medicine and therapeutic applications. While most of these compounds are natural products, determining their mechanism of radical scavenging and common motifs that contribute to antioxidant activity would allow the rational design of novel antioxidants. Here the origins of the antioxidant properties of ten natural products of the lignan family were studied in silico by calculating their thermochemical properties by using ROB3LYP/6-311++G(2df,2p)//B3LYP/6-311G(d,p) model chemistry. Three conditions were modelled: gas phase, ethanol and water solvents. The results allowed assigning the antioxidant activity to specific moieties and structural features of these compounds. It was found that the benzylic hydrogen atoms are the most likely to be abstracted to form radicals and hence define antioxidant properties in most of the studied compounds. The results also suggested that the most likely mechanism of HOO• radical scavenging differs by the key moiety: it is hydrogen atom transfer in case the benzylic C-H bonds, however it is proton coupled electron transfer in case of the compounds where O-H bonds are responsible for radical scavenging.Entities:
Year: 2018 PMID: 30120382 PMCID: PMC6098005 DOI: 10.1038/s41598-018-30860-5
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Structures of the lignans (1–10) studied here for their antioxidant properties.
The calculated BDEs in gas phase, water and ethanol solvent at the weakest X-H (X=C, O) bond and the proton dissociation enthalpy (PDE) of the lignans.
| Comp. | Name | X-H (X=O, C) position | BDEs (X-H, kcal.mol−1) | PDEs (kcal.mol−1) Gas phase | ||
|---|---|---|---|---|---|---|
| Gas phase | Water | Ethanol | ||||
| 1 | Cyclolariciresinol | O4-H | 81.1 | 83.9 | 83.2 | 241.3 |
| C7′-H | 79.8 | 83.9 | 83.1 | 240.1 | ||
| 2 | Secoisolariciresinol | O4-H | 78.6 | 81.8 | 81.1 | 232.1 |
| 3 | Isoliovil | O4-H | 84.1 | 86.7 | 86.1 | 234.8 |
| O4′-H | 85.8 | 86.8 | 86.3 | 236.5 | ||
| C7′-H | 82.8 | 86.6 | 85.9 | 233.5 | ||
| 4 | Matairesinol | O4-H | 85.4 | 87.2 | 86.6 | 230.9 |
| O4′-H | 85.1 | 84.0 | 83.6 | 230.5 | ||
| 5 | Hydroxymatairesinol | O4-H | 85.7 | 87.0 | 86.1 | 232.1 |
| O4′-H | 85.8 | 88.0 | 87.4 | 232.3 | ||
| C7′-H | 85.0 | 84.4 | 83.8 | 231.5 | ||
| 6 | Nortrachelogenin | O4′-H | 78.9 | 82.3 | 81.6 | 229.3 |
| 7 | Pinoresinol | O4-H | 84.3 | 87.0 | 86.3 | 235.7 |
| C2-H | 79.6 | 82.7 | 82.1 | 231.0 | ||
| 8 | O4-H | 84.6 | 86.8 | 85.8 | 233.5 | |
| O4′-H | 84.0 | 86.5 | 85.8 | 233.0 | ||
| C7′-H | 82.0 | 85.8 | 85.1 | 230.9 | ||
| 9 | Lariciresinol | O4-H | 78.5 | 82.1 | 81.4 | 230.8 |
| O4′-H | 78.4 | 81.9 | 81.2 | 230.7 | ||
| 10 | LignanA | O4-H | 84.9 | 84.0 | 83.6 | 238.5 |
| O4′-H | 84.6 | 82.7 | 82.4 | 238.2 | ||
| C12-H | 80.9 | 83.6 | 82.9 | 234.5 | ||
The calculated ionization energy (IE) of the studied compounds.
| Comp. | IE (kcal.mol−1) | ΔIE (kcal.mol−1)* | PDE + IE (kcal.mol−1) | ||
|---|---|---|---|---|---|
| Vertical | Adiabatic | Vertical | Adiabatic | ||
| 1 | 158.9 | 154.3 | −38.0 | −39.4 | 394.3 |
| 2 | 167.0 | 161.0 | −29.9 | −29.9 | 393.1 |
| 3 | 168.3 | 163.7 | −28.6 | −28.6 | 397.2 |
| 4 | 172.5 | 169.0 | −24.4 | −24.4 | 399.5 |
| 5 | 171.3 | 167.9 | −25.6 | −25.6 | 399.4 |
| 6 | 171.8 | 164.2 | −25.1 | −25.1 | 393.5 |
| 7 | 165.1 | 163.0 | −31.8 | −31.8 | 394.1 |
| 8 | 169.0 | 166.0 | −27.9 | −27.9 | 396.5 |
| 9 | 169.3 | 162.1 | −27.6 | −27.6 | 392.8 |
| 10 | 164.7 | 161.0 | −32.2 | −32.2 | 397.4 |
*ΔIE = IE – IE phenol.
The calculated PAs and ETEs of the studied lignans.
| Comp. | X-H (X=C, O) position | PAs (kcal.mol−1) | ETEs (kcal.mol−1) | ||||
|---|---|---|---|---|---|---|---|
| Gas phase | Water | Ethanol | Gas phase | Water | Ethanol | ||
| 1 | O4′-H | 341.6 | 296.3 | 297.8 | 53.9 | 100.0 | 89.5 |
| O4-H | 243.7 | 298.4 | 299.9 | 52.9 | 96.7 | 95.2 | |
| C7′-H | 363.4 | 230.4 | 331.4 | 30.8 | 64.8 | 63.7 | |
| 2 | O4-H | 338.1 | 295.7 | 297.0 | 55.0 | 97.4 | 96.1 |
| 3 | O4-H | 344.7 | 299.9 | 301.4 | 53.9 | 98.1 | 96.7 |
| O4′-H | 342.0 | 298.5 | 299.9 | 58.2 | 99.7 | 98.4 | |
| C7′-H | 375.7 | 337.9 | 339.1 | 21.6 | 60.0 | 58.7 | |
| 4 | O4-H | 339.9 | 300.0 | 301.4 | 60.0 | 98.5 | 97.2 |
| O4′-H | 342.4 | 300.8 | 302.2 | 57.1 | 94.6 | 93.4 | |
| 5 | O4-H | 339.3 | 303.3 | 304.5 | 60.9 | 95.1 | 94.4 |
| O4′-H | 335.3 | 299.0 | 300.2 | 64.4 | 100.3 | 99.2 | |
| C7′-H | 373.6 | 338.7 | 339.8 | 25.9 | 60.7 | 59.6 | |
| 6 | O4′-H | 335.7 | 294.5 | 295.8 | 57.7 | 99.1 | 97.8 |
| 7 | O4-H | 342.6 | 297.9 | 299.3 | 56.1 | 100.4 | 99.0 |
| C2-H | 377.5 | 337.7 | 339.0 | 16.6 | 56.4 | 55.1 | |
| 8 | O4-H | 342.8 | 299.7 | 301.2 | 56.3 | 98.4 | 97.0 |
| O4′-H | 343.7 | 303.1 | 304.4 | 54.8 | 94.7 | 93.4 | |
| C7′-H | 364.7 | 331.1 | 332.2 | 31.8 | 66.0 | 64.9 | |
| 9 | O4-H | 338.8 | 293.9 | 295.3 | 54.1 | 99.5 | 98.0 |
| O4′-H | 342.7 | 295.6 | 297.1 | 51.2 | 97.6 | 96.1 | |
| 10 | O4-H | 348.4 | 297.5 | 297.1 | 50.9 | 97.9 | 98.4 |
| O4′-H | 342.8 | 299.6 | 301.0 | 56.3 | 94.5 | 93.3 | |
| O11-H | 341.0 | 300.6 | 301.9 | 75.0 | 115.9 | 114.6 | |
| C12-H | 374.3 | 338.4 | 339.5 | 21.0 | 56.6 | 55.5 | |
Figure 2PES of reaction between the selected phenolic compounds and HOO•.
Natural bond analysis of transition states of the reactions.
| Reactions | Donor NBO (i) | Acceptor NBO (j) | E(2) (kcal.mol−1) |
|---|---|---|---|
| LP(3)O1 | σ*(1)C7′-H | 53.1 | |
| LP(3)O1 | LP*(1)H | 99.6 | |
| LP(3)O4 | LP*(1)H | 131.4 | |
| LP(3)O1 | σ*(1)C2-H | 45.2 | |
| LP(3)O1 | LP*(1)H | 98.7 | |
| LP(3)O4′ | LP*(1)H | 127.9 | |
| LP(3)O1 | LP*(1)H | 81.4 | |
| LP(3)O4′ | LP*(1)H | 151.2 |
Figure 3SOMO densities surface and ASD of the transition states of the reactions.