Literature DB >> 30117038

Conformationally locked lanthanide chelating tags for convenient pseudocontact shift protein nuclear magnetic resonance spectroscopy.

Daniel Joss1, Roché M Walliser1, Kaspar Zimmermann1, Daniel Häussinger2.   

Abstract

Pseudocontact shifts (PCS) generated by lanthanide chelating tags yield valuable restraints for investigating protein structures, dynamics and interactions in solution. In this work, dysprosium-, thulium- and terbium-complexes of eight-fold methylated 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid tags [DOTA-M8-(4R4S)-SSPy] are presented that induce large pseudocontact shifts up to 5.5 ppm and adopt exclusively the square antiprismatic conformation. This is in contrast to our earlier findings on complexes of the stereoisomeric DOTA-M8-(8S)-SSPy, where significant amounts of the twisted square antiprismatic conformer for the Dy tag were observed. The Dy-, Tm-, Tb- and Lu-complexes of DOTA-M8-(4R4S)-SSPy were conjugated to ubiquitin S57C and selectively 15N leucine labeled human carbonic anhydrase II S50C, resulting in only one set of signals. Furthermore, we investigated the conformation of the thulium- and dysprosium-complexes in vacuo and with implicit water solvent using density functional theory calculations. The calculated energy differences between the two different conformations (7.0-50.5 kJ/mol) and experimental evidence from the corresponding ytterbium- and yttrium-complexes clearly suggest a SAP [Λ(δδδδ)] geometry for the complexes presented in this study. The lanthanide chelating tag studied in this work offer insights into the solution structure of proteins by inducing strong pseudocontact shifts, show different tensor properties compared to its predecessor, enables a convenient assignment procedure, is accessed by a more economic synthesis than its predecessor and constitutes a highly promising starting point for further developments of lanthanide chelating tags.

Entities:  

Keywords:  Density functional theory; Lanthanide chelating tag; Nuclear magnetic resonance; Paramagnetic; Protein; Pseudocontact shift

Mesh:

Substances:

Year:  2018        PMID: 30117038     DOI: 10.1007/s10858-018-0203-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  43 in total

1.  General performance of density functionals.

Authors:  Sérgio Filipe Sousa; Pedro Alexandrino Fernandes; Maria João Ramos
Journal:  J Phys Chem A       Date:  2007-08-25       Impact factor: 2.781

2.  Density functional theory for transition metals and transition metal chemistry.

Authors:  Christopher J Cramer; Donald G Truhlar
Journal:  Phys Chem Chem Phys       Date:  2009-10-21       Impact factor: 3.676

3.  In-Cell Protein Structures from 2D NMR Experiments.

Authors:  Thomas Müntener; Daniel Häussinger; Philipp Selenko; Francois-Xavier Theillet
Journal:  J Phys Chem Lett       Date:  2016-07-12       Impact factor: 6.475

4.  Stable and rigid DTPA-like paramagnetic tags suitable for in vitro and in situ protein NMR analysis.

Authors:  Jia-Liang Chen; Yu Zhao; Yan-Jun Gong; Bin-Bin Pan; Xiao Wang; Xun-Cheng Su
Journal:  J Biomol NMR       Date:  2017-12-09       Impact factor: 2.835

5.  Lanthanide tags for site-specific ligation to an unnatural amino acid and generation of pseudocontact shifts in proteins.

Authors:  Choy Theng Loh; Kiyoshi Ozawa; Kellie L Tuck; Nicholas Barlow; Thomas Huber; Gottfried Otting; Bim Graham
Journal:  Bioconjug Chem       Date:  2013-01-16       Impact factor: 4.774

6.  Characterizing the magnetic susceptibility tensor of lanthanide-containing polymethylated-DOTA complexes.

Authors:  Madeleine Strickland; Charles D Schwieters; Christoph Göbl; Ana C L Opina; Marie-Paule Strub; Rolf E Swenson; Olga Vasalatiy; Nico Tjandra
Journal:  J Biomol NMR       Date:  2016-09-22       Impact factor: 2.835

7.  Direct and selective tagging of cysteine residues in peptides and proteins with 4-nitropyridyl lanthanide complexes.

Authors:  Kathryn L Gempf; Stephen J Butler; Alexander M Funk; David Parker
Journal:  Chem Commun (Camb)       Date:  2013-08-29       Impact factor: 6.222

8.  Novel techniques for weak alignment of proteins in solution using chemical tags coordinating lanthanide ions.

Authors:  Takahisa Ikegami; Laurent Verdier; Peyman Sakhaii; Susanne Grimme; Barbara Pescatore; Krishna Saxena; Klaus M Fiebig; Christian Griesinger
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

9.  Beyond Bleaney's Theory: Experimental and Theoretical Analysis of Periodic Trends in Lanthanide-Induced Chemical Shift.

Authors:  Elizaveta A Suturina; Kevin Mason; Carlos F G C Geraldes; Ilya Kuprov; David Parker
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-24       Impact factor: 15.336

10.  Gauging the Performance of Density Functionals for Lanthanide-Containing Molecules.

Authors:  Stephanie Grimmel; George Schoendorff; Angela K Wilson
Journal:  J Chem Theory Comput       Date:  2016-02-19       Impact factor: 6.006

View more
  4 in total

1.  Structure determination of high-energy states in a dynamic protein ensemble.

Authors:  John B Stiller; Renee Otten; Daniel Häussinger; Pascal S Rieder; Douglas L Theobald; Dorothee Kern
Journal:  Nature       Date:  2022-03-02       Impact factor: 69.504

Review 2.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

3.  Localization of ligands within human carbonic anhydrase II using 19F pseudocontact shift analysis.

Authors:  Kaspar Zimmermann; Daniel Joss; Thomas Müntener; Elisa S Nogueira; Marc Schäfer; Livia Knörr; Fabien W Monnard; Daniel Häussinger
Journal:  Chem Sci       Date:  2019-04-10       Impact factor: 9.825

4.  A Ln(III)-3-hydroxypyridine pH responsive probe optimized by DFT.

Authors:  Michael A Caldwell; Christopher R Brue; Tyler J Whittemore; Thomas J Meade
Journal:  RSC Adv       Date:  2020-03-03       Impact factor: 3.361

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.