| Literature DB >> 30096915 |
Zaira Ianniello1, Alessandro Fatica2.
Abstract
We are currently assisting in the explosion of epitranscriptomics, which studies the functional role of chemical modifications into RNA molecules. Among more than 100 RNA modifications, the N6-methyladenosine (m⁶A), in particular, has attracted the interest of researchers all around the world. m⁶A is the most abundant internal chemical modification in mRNA, and it can control any aspect of mRNA post-transcriptional regulation. m⁶A is installed by "writers", removed by "erasers", and recognized by "readers"; thus, it can be compared to the reversible and dynamic epigenetic modifications in histones and DNA. Given its fundamental role in determining the way mRNAs are expressed, it comes as no surprise that alterations to m⁶A modifications have a deep impact in cell differentiation, normal development and human diseases. Here, we review the proteins involved in m⁶A modification in mammals, m⁶A role in gene expression and its contribution to cancer development. In particular, we will focus on acute myeloid leukaemia (AML), which provides an initial indication of how alteration in m⁶A modification can disrupt normal cellular differentiation and lead to cancer.Entities:
Keywords: AML; RNA; epitranscriptomics; leukaemia; m6A
Mesh:
Substances:
Year: 2018 PMID: 30096915 PMCID: PMC6121471 DOI: 10.3390/ijms19082345
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1m6A modification is installed by the core METTL3/METTL14 (methyltransferase-like protein 3/methyltransferase-like protein 14) catalytic complex and erased by the two demethylases FTO (fat mass and obesity-associated) and ALKBH5 (alkB homologue 5). The MACOM complex, composed of WTAP (Wilms tumor 1-associated protein), RBM15 (RNA-binding motif 15), VIRMA (Vir-like m6A methyltransferase-associated), ZC3H13 (zinc finger CCCH-type containing 13) and CBLL1 (Cbl proto-oncogene like 1), guides the core complex on specific mRNAs and contributes to select specific sites within single mRNA.
Mammalian m6A (N6-methyladenosine) regulators.
| Protein | Classification | Function |
|---|---|---|
| METTL3 | Writer | Installs m6A in mRNA; promotes translation |
| METTL14 | Writer | Cooperates with METTL3 in m6A installation |
| METTL16 | Writer | Installs m6A in U6 snRNA and pre-mRNA |
| FTO | Eraser | Remove m6A and m6Am from mRNA |
| ALKBH5 | Eraser | Remove m6A from mRNA |
| WTAP | Component of the regulatory MACOM complex | Regulates m6A installation |
| VIRMA | Component of the regulatory MACOM complex | Regulates m6A installation |
| CBLL1 | Component of the regulatory MACOM complex | Regulates m6A installation |
| RBM15 | Component of the regulatory MACOM complex | Regulates m6A installation |
| ZC3H13 | Component of the regulatory MACOM complex | Regulates m6A installation |
| ABCF1 | Direct reader | Stimulates translation |
| eIF3 | Direct reader | Stimulates translation |
| HNRPA2B1 | Direct reader | Stimulates microRNA processing |
| IGF2BPs | Direct readers | Increase mRNA stability |
| YTHDC1 | Direct reader | Stimulates splicing and mRNA export |
| YTHDC2 | Direct reader | Stimulates mRNA decay and translation |
| YTHDF1 | Direct reader | Stimulates translation |
| YTHDF2 | Direct reader | Stimulates mRNA decay |
| YTHDF3 | Direct reader | Stimulates mRNA decay and translation |
| FMR1 | Indirect reader | Inhibits translation |
| HNRNPC | Indirect reader | Regulates splicing |
| ELAVL1 | m6A repelled protein | Increases mRNA stability |
| G3BPs | m6A repelled protein | Increase mRNA stability |
Figure 2Functional roles of m6A modification on mRNA expression. Most of m6A’s effects on mRNA metabolism are mediated by reader proteins whose binding can be directly or indirectly affected by m6A. In the nucleus, the direct readers are YTHDC1 and HNRNPA2, which stimulate splicing and microRNA processing, respectively. YTHDC1 also stimulates mRNA export. The splicing regulator HNRNPC (heterogeneous nuclear ribonucleoprotein) is an indirect reader whose binding is favored by structural rearrangement induced by m6A modification. In the cytoplasm, mRNA translation is stimulated by the direct reader eIF3, ABCF1 (ATP binding cassette subfamily F member 1), YTHDF1, YTHDF3 and YTHDC2, while it is inhibited by the indirect reader FMR1. mRNA decay is increased by the direct readers YTHDF2, YTHDF3 and YTHDC2, while it is inhibited by the direct readers IGF2BPs (insulin-like growth factor 2 mRNA-binding protein) and the m6A-repelled proteins ELAVL1 (ELAV like RNA binding protein 1) and G3BPs (G3BP stress granule assembly factor).