Literature DB >> 29103884

Reading m6A in the Transcriptome: m6A-Binding Proteins.

Deepak P Patil1, Brian F Pickering1, Samie R Jaffrey2.   

Abstract

N6-Methyladenosine (m6A) is the most prevalent post-transcriptional modification of eukaryotic mRNA and long noncoding RNA. m6A mediates its effects primarily by recruiting proteins, including the multiprotein eukaryotic initiation factor 3 complex and a set of proteins that contain the YTH domain. Here we describe the mechanisms by which YTH domain-containing proteins bind m6A and influence the fate of m6A-containing RNA in mammalian cells. We discuss the diverse, and occasionally contradictory, functions ascribed to these proteins and the emerging concepts that are influencing our understanding of these proteins and their effects on the epitranscriptome.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  N(6)-methyl adenosine; RNA metabolism; YTH proteins; m(6)A modification; splicing; translational regulation

Mesh:

Substances:

Year:  2017        PMID: 29103884      PMCID: PMC5794650          DOI: 10.1016/j.tcb.2017.10.001

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  85 in total

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Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

2.  m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells.

Authors:  Pedro J Batista; Benoit Molinie; Jinkai Wang; Kun Qu; Jiajing Zhang; Lingjie Li; Donna M Bouley; Ernesto Lujan; Bahareh Haddad; Kaveh Daneshvar; Ava C Carter; Ryan A Flynn; Chan Zhou; Kok-Seong Lim; Peter Dedon; Marius Wernig; Alan C Mullen; Yi Xing; Cosmas C Giallourakis; Howard Y Chang
Journal:  Cell Stem Cell       Date:  2014-10-16       Impact factor: 24.633

3.  Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain.

Authors:  Shukun Luo; Liang Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

4.  Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Authors:  Kate D Meyer; Yogesh Saletore; Paul Zumbo; Olivier Elemento; Christopher E Mason; Samie R Jaffrey
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

5.  YTHDF3 facilitates translation and decay of N6-methyladenosine-modified RNA.

Authors:  Hailing Shi; Xiao Wang; Zhike Lu; Boxuan S Zhao; Honghui Ma; Phillip J Hsu; Chang Liu; Chuan He
Journal:  Cell Res       Date:  2017-01-20       Impact factor: 25.617

6.  Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase.

Authors:  J A Bokar; M E Shambaugh; D Polayes; A G Matera; F M Rottman
Journal:  RNA       Date:  1997-11       Impact factor: 4.942

7.  Precise localization of m6A in Rous sarcoma virus RNA reveals clustering of methylation sites: implications for RNA processing.

Authors:  S E Kane; K Beemon
Journal:  Mol Cell Biol       Date:  1985-09       Impact factor: 4.272

8.  Sequence specificity of internal methylation in B77 avian sarcoma virus RNA subunits.

Authors:  K Dimock; C M Stoltzfus
Journal:  Biochemistry       Date:  1977-02-08       Impact factor: 3.162

9.  Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.

Authors:  Bastian Linder; Anya V Grozhik; Anthony O Olarerin-George; Cem Meydan; Christopher E Mason; Samie R Jaffrey
Journal:  Nat Methods       Date:  2015-06-29       Impact factor: 28.547

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  172 in total

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Review 2.  The epitranscriptome and synaptic plasticity.

Authors:  Mathieu N Flamand; Kate D Meyer
Journal:  Curr Opin Neurobiol       Date:  2019-05-17       Impact factor: 6.627

Review 3.  N6-methyladenosine modifications: interactions with novel RNA-binding proteins and roles in signal transduction.

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Review 5.  RNA epigenetics and cardiovascular diseases.

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6.  A Unified Model for the Function of YTHDF Proteins in Regulating m6A-Modified mRNA.

Authors:  Sara Zaccara; Samie R Jaffrey
Journal:  Cell       Date:  2020-06-02       Impact factor: 41.582

7.  m6A Modification Prevents Formation of Endogenous Double-Stranded RNAs and Deleterious Innate Immune Responses during Hematopoietic Development.

Authors:  Yimeng Gao; Radovan Vasic; Yuanbin Song; Rhea Teng; Chengyang Liu; Rana Gbyli; Giulia Biancon; Raman Nelakanti; Kirsten Lobben; Eriko Kudo; Wei Liu; Anastasia Ardasheva; Xiaoying Fu; Xiaman Wang; Poorval Joshi; Veronica Lee; Burak Dura; Gabriella Viero; Akiko Iwasaki; Rong Fan; Andrew Xiao; Richard A Flavell; Hua-Bing Li; Toma Tebaldi; Stephanie Halene
Journal:  Immunity       Date:  2020-06-03       Impact factor: 31.745

Review 8.  Epigenetic role of N6-methyladenosine (m6A) RNA methylation in the cardiovascular system.

Authors:  Kun Zhao; Chuan-Xi Yang; Peng Li; Wei Sun; Xiang-Qing Kong
Journal:  J Zhejiang Univ Sci B       Date:  2020-07       Impact factor: 3.066

Review 9.  The Future of Cross-Linking and Immunoprecipitation (CLIP).

Authors:  Jernej Ule; Hun-Way Hwang; Robert B Darnell
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-08-01       Impact factor: 10.005

10.  ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2.

Authors:  Devanshi Jain; M Rhyan Puno; Cem Meydan; Nathalie Lailler; Christopher E Mason; Christopher D Lima; Kathryn V Anderson; Scott Keeney
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