Literature DB >> 30089825

Guidelines for reporting secondary findings of genome sequencing in cancer genes: the SFMPP recommendations.

Pascal Pujol1,2, Pierre Vande Perre3,4, Laurence Faivre5, Damien Sanlaville6,7,8, Carole Corsini3, Bernard Baertschi9,10, Michèle Anahory11, Dominique Vaur12,13, Sylviane Olschwang14,15,16, Nadem Soufir17,18, Noëlle Bastide19, Sarah Amar11, Michèle Vintraud20, Olivier Ingster21, Stéphane Richard22, Pierre Le Coz23, Jean-Philippe Spano24, Olivier Caron25, Pascal Hammel26, Elisabeth Luporsi27, Alain Toledano20, Xavier Rebillard28,29, Anne Cambon-Thomsen30,31, Olivier Putois32, Jean-Marc Rey33,34, Christian Hervé35, Caroline Zorn36, Karen Baudry3, Virginie Galibert3, Joseph Gligorov37, David Azria38, Brigitte Bressac-de Paillerets39, Nelly Burnichon25,34,40,41, Marc Spielmann42, Daniel Zarca42, Isabelle Coupier3,43, Olivier Cussenot44,45, Anne-Paule Gimenez-Roqueplo25,34,40,41, Sophie Giraud34,46, Anne-Sophie Lapointe47, Patricia Niccoli48, Isabelle Raingeard49, Muriel Le Bidan50, Thierry Frebourg51, Arash Rafii52,53, David Geneviève54,55.   

Abstract

In oncology, the expanding use of multi-gene panels to explore familial cancer predisposition and tumor genome analysis has led to increased secondary findings discoveries (SFs) and has given rise to important medical, ethical, and legal issues. The American College of Medical Genetics and Genomics published a policy statement for managing SFs for a list of genes, including 25 cancer-related genes. Currently, there are few recommendations in Europe. From June 2016 to May 2017, the French Society of Predictive and Personalized Medicine (SFMPP) established a working group of 47 experts to elaborate guidelines for managing information given on the SFs for genes related to cancers. A subgroup of ethicists, lawyers, patients' representatives, and psychologists provided ethical reflection, information guidelines, and materials (written consent form and video). A subgroup with medical expertise, including oncologists and clinical and molecular geneticists, provided independent evaluation and classification of 60 genes. The main criteria were the "actionability" of the genes (available screening or prevention strategies), the risk evaluation (severity, penetrance, and age of disease onset), and the level of evidence from published data. Genes were divided into three classes: for class 1 genes (n = 36), delivering the information on SFs was recommended; for class 2 genes (n = 5), delivering the information remained questionable because of insufficient data from the literature and/or level of evidence; and for class 3 genes (n = 19), delivering the information on SFs was not recommended. These guidelines for managing SFs for cancer-predisposing genes provide new insights for clinicians and laboratories to standardize clinical practices.

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Year:  2018        PMID: 30089825      PMCID: PMC6244405          DOI: 10.1038/s41431-018-0224-1

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  46 in total

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3.  Large-scale whole-genome sequencing of the Icelandic population.

Authors:  Daniel F Gudbjartsson; Hannes Helgason; Sigurjon A Gudjonsson; Florian Zink; Asmundur Oddson; Arnaldur Gylfason; Soren Besenbacher; Gisli Magnusson; Bjarni V Halldorsson; Eirikur Hjartarson; Gunnar Th Sigurdsson; Simon N Stacey; Michael L Frigge; Hilma Holm; Jona Saemundsdottir; Hafdis Th Helgadottir; Hrefna Johannsdottir; Gunnlaugur Sigfusson; Gudmundur Thorgeirsson; Jon Th Sverrisson; Solveig Gretarsdottir; G Bragi Walters; Thorunn Rafnar; Bjarni Thjodleifsson; Einar S Bjornsson; Sigurdur Olafsson; Hildur Thorarinsdottir; Thora Steingrimsdottir; Thora S Gudmundsdottir; Asgeir Theodors; Jon G Jonasson; Asgeir Sigurdsson; Gyda Bjornsdottir; Jon J Jonsson; Olafur Thorarensen; Petur Ludvigsson; Hakon Gudbjartsson; Gudmundur I Eyjolfsson; Olof Sigurdardottir; Isleifur Olafsson; David O Arnar; Olafur Th Magnusson; Augustine Kong; Gisli Masson; Unnur Thorsteinsdottir; Agnar Helgason; Patrick Sulem; Kari Stefansson
Journal:  Nat Genet       Date:  2015-03-25       Impact factor: 38.330

4.  Reporting practices for unsolicited and secondary findings from next-generation sequencing technologies: Perspectives of laboratory personnel.

Authors:  Danya F Vears; Karine Sénécal; Pascal Borry
Journal:  Hum Mutat       Date:  2017-06-06       Impact factor: 4.878

5.  Actionable, pathogenic incidental findings in 1,000 participants' exomes.

Authors:  Michael O Dorschner; Laura M Amendola; Emily H Turner; Peggy D Robertson; Brian H Shirts; Carlos J Gallego; Robin L Bennett; Kelly L Jones; Mari J Tokita; James T Bennett; Jerry H Kim; Elisabeth A Rosenthal; Daniel S Kim; Holly K Tabor; Michael J Bamshad; Arno G Motulsky; C Ronald Scott; Colin C Pritchard; Tom Walsh; Wylie Burke; Wendy H Raskind; Peter Byers; Fuki M Hisama; Deborah A Nickerson; Gail P Jarvik
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6.  Frequency of Germline Mutations in 25 Cancer Susceptibility Genes in a Sequential Series of Patients With Breast Cancer.

Authors:  Nadine Tung; Nancy U Lin; John Kidd; Brian A Allen; Nanda Singh; Richard J Wenstrup; Anne-Renee Hartman; Eric P Winer; Judy E Garber
Journal:  J Clin Oncol       Date:  2016-03-14       Impact factor: 44.544

7.  Germline BAP1 mutations misreported as somatic based on tumor-only testing.

Authors:  Mohamed H Abdel-Rahman; Karan Rai; Robert Pilarski; Frederick H Davidorf; Colleen M Cebulla
Journal:  Fam Cancer       Date:  2016-04       Impact factor: 2.375

8.  Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2016 update (ACMG SF v2.0): a policy statement of the American College of Medical Genetics and Genomics.

Authors:  Sarah S Kalia; Kathy Adelman; Sherri J Bale; Wendy K Chung; Christine Eng; James P Evans; Gail E Herman; Sophia B Hufnagel; Teri E Klein; Bruce R Korf; Kent D McKelvey; Kelly E Ormond; C Sue Richards; Christopher N Vlangos; Michael Watson; Christa L Martin; David T Miller
Journal:  Genet Med       Date:  2016-11-17       Impact factor: 8.822

9.  Molecular profiling of metastatic colorectal tumors using next-generation sequencing: a single-institution experience.

Authors:  Jun Gong; May Cho; Marvin Sy; Ravi Salgia; Marwan Fakih
Journal:  Oncotarget       Date:  2017-06-27

10.  Sequence variant classification and reporting: recommendations for improving the interpretation of cancer susceptibility genetic test results.

Authors:  Sharon E Plon; Diana M Eccles; Douglas Easton; William D Foulkes; Maurizio Genuardi; Marc S Greenblatt; Frans B L Hogervorst; Nicoline Hoogerbrugge; Amanda B Spurdle; Sean V Tavtigian
Journal:  Hum Mutat       Date:  2008-11       Impact factor: 4.878

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  8 in total

1.  Disclosure of secondary findings in exome sequencing of 2480 Japanese cancer patients.

Authors:  Yasue Horiuchi; Hiroyuki Matsubayashi; Yoshimi Kiyozumi; Seiichiro Nishimura; Satomi Higashigawa; Nobuhiro Kado; Takeshi Nagashima; Maki Mizuguchi; Sumiko Ohnami; Makoto Arai; Kenichi Urakami; Masatoshi Kusuhara; Ken Yamaguchi
Journal:  Hum Genet       Date:  2020-07-24       Impact factor: 4.132

2.  Consent for clinical genome sequencing: considerations from the Clinical Sequencing Exploratory Research Consortium.

Authors:  Joon-Ho Yu; Paul S Appelbaum; Kyle B Brothers; Steven Joffe; Tia L Kauffman; Barbara A Koenig; Anya Er Prince; Sarah Scollon; Susan M Wolf; Barbara A Bernhardt; Benjamin S Wilfond
Journal:  Per Med       Date:  2019-07-17       Impact factor: 2.512

3.  Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2021 update: a policy statement of the American College of Medical Genetics and Genomics (ACMG).

Authors:  David T Miller; Kristy Lee; Adam S Gordon; Laura M Amendola; Kathy Adelman; Sherri J Bale; Wendy K Chung; Michael H Gollob; Steven M Harrison; Gail E Herman; Ray E Hershberger; Teri E Klein; Kent McKelvey; C Sue Richards; Christopher N Vlangos; Douglas R Stewart; Michael S Watson; Christa Lese Martin
Journal:  Genet Med       Date:  2021-05-20       Impact factor: 8.822

4.  From Targeting Somatic Mutations to Finding Inherited Cancer Predispositions: The Other Side of the Coin.

Authors:  Pascal Pujol; Thibault De La Motte Rouge; Frédérique Penault-Llorca
Journal:  Diagnostics (Basel)       Date:  2019-07-26

5.  Singleton exome sequencing of 90 fetuses with ultrasound anomalies revealing novel disease-causing variants and genotype-phenotype correlations.

Authors:  Mateja Smogavec; Maria Gerykova Bujalkova; Reinhard Lehner; Jürgen Neesen; Jana Behunova; Gülen Yerlikaya-Schatten; Theresa Reischer; Reinhard Altmann; Denisa Weis; Hans-Christoph Duba; Franco Laccone
Journal:  Eur J Hum Genet       Date:  2022-01-01       Impact factor: 4.246

6.  Prevalence of pathogenic germline variants in the circulating tumor DNA testing.

Authors:  Yoshihiro Yamamoto; Keita Fukuyama; Masashi Kanai; Tomohiro Kondo; Masahiro Yoshioka; Tadayuki Kou; Pham Nguyen Quy; Reiko Kimura-Tsuchiya; Takahiro Yamada; Shigemi Matsumoto; Shinji Kosugi; Manabu Muto
Journal:  Int J Clin Oncol       Date:  2022-07-23       Impact factor: 3.850

7.  Value-based genomic screening: exploring genomic screening for chronic diseases using triple value principles.

Authors:  Viktor Dombrádi; Erica Pitini; Carla G van El; Anant Jani; Martina Cornel; Paolo Villari; Muir Gray; Klára Bíró
Journal:  BMC Health Serv Res       Date:  2019-11-11       Impact factor: 2.655

8.  Opportunistic genomic screening. Recommendations of the European Society of Human Genetics.

Authors:  Guido de Wert; Wybo Dondorp; Angus Clarke; Elisabeth M C Dequeker; Christophe Cordier; Zandra Deans; Carla G van El; Florence Fellmann; Ros Hastings; Sabine Hentze; Heidi Howard; Milan Macek; Alvaro Mendes; Chris Patch; Emmanuelle Rial-Sebbag; Vigdis Stefansdottir; Martina C Cornel; Francesca Forzano
Journal:  Eur J Hum Genet       Date:  2020-11-22       Impact factor: 4.246

  8 in total

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