Literature DB >> 27854360

Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2016 update (ACMG SF v2.0): a policy statement of the American College of Medical Genetics and Genomics.

Sarah S Kalia1, Kathy Adelman2, Sherri J Bale3, Wendy K Chung4,5, Christine Eng6, James P Evans7, Gail E Herman8, Sophia B Hufnagel9, Teri E Klein10, Bruce R Korf11, Kent D McKelvey12,13, Kelly E Ormond10, C Sue Richards14, Christopher N Vlangos15, Michael Watson16, Christa L Martin17, David T Miller18.   

Abstract

Disclaimer: These recommendations are designed primarily as an educational resource for medical geneticists and other healthcare providers to help them provide quality medical services. Adherence to these recommendations is completely voluntary and does not necessarily assure a successful medical outcome. These recommendations should not be considered inclusive of all proper procedures and tests or exclusive of other procedures and tests that are reasonably directed toward obtaining the same results. In determining the propriety of any specific procedure or test, the clinician should apply his or her own professional judgment to the specific clinical circumstances presented by the individual patient or specimen. Clinicians are encouraged to document the reasons for the use of a particular procedure or test, whether or not it is in conformance with this statement. Clinicians also are advised to take notice of the date this statement was adopted and to consider other medical and scientific information that becomes available after that date. It also would be prudent to consider whether intellectual property interests may restrict the performance of certain tests and other procedures.To promote standardized reporting of actionable information from clinical genomic sequencing, in 2013, the American College of Medical Genetics and Genomics (ACMG) published a minimum list of genes to be reported as incidental or secondary findings. The goal was to identify and manage risks for selected highly penetrant genetic disorders through established interventions aimed at preventing or significantly reducing morbidity and mortality. The ACMG subsequently established the Secondary Findings Maintenance Working Group to develop a process for curating and updating the list over time. We describe here the new process for accepting and evaluating nominations for updates to the secondary findings list. We also report outcomes from six nominations received in the initial 15 months after the process was implemented. Applying the new process while upholding the core principles of the original policy statement resulted in the addition of four genes and removal of one gene; one gene did not meet criteria for inclusion. The updated secondary findings minimum list includes 59 medically actionable genes recommended for return in clinical genomic sequencing. We discuss future areas of focus, encourage continued input from the medical community, and call for research on the impact of returning genomic secondary findings.Genet Med 19 2, 249-255.

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Year:  2016        PMID: 27854360     DOI: 10.1038/gim.2016.190

Source DB:  PubMed          Journal:  Genet Med        ISSN: 1098-3600            Impact factor:   8.822


  16 in total

Review 1.  The clinical, biochemical, and molecular spectrum of ornithine transcarbamylase deficiency.

Authors:  M Tuchman
Journal:  J Lab Clin Med       Date:  1992-12

Review 2.  Potential Uses and Inherent Challenges of Using Genome-Scale Sequencing to Augment Current Newborn Screening.

Authors:  Jonathan S Berg; Cynthia M Powell
Journal:  Cold Spring Harb Perspect Med       Date:  2015-10-05       Impact factor: 6.915

Review 3.  Wilson's disease.

Authors:  Aftab Ala; Ann P Walker; Keyoumars Ashkan; James S Dooley; Michael L Schilsky
Journal:  Lancet       Date:  2007-02-03       Impact factor: 79.321

4.  Diagnosis and treatment of Wilson disease: an update.

Authors:  Eve A Roberts; Michael L Schilsky
Journal:  Hepatology       Date:  2008-06       Impact factor: 17.425

5.  Risk of serious illness in heterozygotes for ornithine transcarbamylase deficiency.

Authors:  M L Batshaw; M Msall; A L Beaudet; J Trojak
Journal:  J Pediatr       Date:  1986-02       Impact factor: 4.406

6.  Metabolic and neuropsychological phenotype in women heterozygous for ornithine transcarbamylase deficiency.

Authors:  Kunsang Gyato; J Wray; Z J Huang; M Yudkoff; Mark L Batshaw
Journal:  Ann Neurol       Date:  2004-01       Impact factor: 10.422

7.  ACMG policy statement: updated recommendations regarding analysis and reporting of secondary findings in clinical genome-scale sequencing.

Authors: 
Journal:  Genet Med       Date:  2014-11-13       Impact factor: 8.822

8.  Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Authors:  Sue Richards; Nazneen Aziz; Sherri Bale; David Bick; Soma Das; Julie Gastier-Foster; Wayne W Grody; Madhuri Hegde; Elaine Lyon; Elaine Spector; Karl Voelkerding; Heidi L Rehm
Journal:  Genet Med       Date:  2015-03-05       Impact factor: 8.822

9.  A standardized, evidence-based protocol to assess clinical actionability of genetic disorders associated with genomic variation.

Authors:  Jessica Ezzell Hunter; Stephanie A Irving; Leslie G Biesecker; Adam Buchanan; Brian Jensen; Kristy Lee; Christa Lese Martin; Laura Milko; Kristin Muessig; Annie D Niehaus; Julianne O'Daniel; Margaret A Piper; Erin M Ramos; Sheri D Schully; Alan F Scott; Anne Slavotinek; Nara Sobreira; Natasha Strande; Meredith Weaver; Elizabeth M Webber; Marc S Williams; Jonathan S Berg; James P Evans; Katrina A B Goddard
Journal:  Genet Med       Date:  2016-04-28       Impact factor: 8.822

10.  Utility of whole-genome sequencing for detection of newborn screening disorders in a population cohort of 1,696 neonates.

Authors:  Dale L Bodian; Elisabeth Klein; Ramaswamy K Iyer; Wendy S W Wong; Prachi Kothiyal; Daniel Stauffer; Kathi C Huddleston; Amber D Gaither; Irina Remsburg; Alina Khromykh; Robin L Baker; George L Maxwell; Joseph G Vockley; John E Niederhuber; Benjamin D Solomon
Journal:  Genet Med       Date:  2015-09-03       Impact factor: 8.822

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  556 in total

1.  Rapid clinical exome sequencing in a pediatric ICU: Genetic counselor impacts and challenges.

Authors:  Sarah V Clowes Candadai; Megan C Sikes; Jenny M Thies; Amanda S Freed; James T Bennett
Journal:  J Genet Couns       Date:  2019-04       Impact factor: 2.537

2.  Disclosure of secondary findings in exome sequencing of 2480 Japanese cancer patients.

Authors:  Yasue Horiuchi; Hiroyuki Matsubayashi; Yoshimi Kiyozumi; Seiichiro Nishimura; Satomi Higashigawa; Nobuhiro Kado; Takeshi Nagashima; Maki Mizuguchi; Sumiko Ohnami; Makoto Arai; Kenichi Urakami; Masatoshi Kusuhara; Ken Yamaguchi
Journal:  Hum Genet       Date:  2020-07-24       Impact factor: 4.132

Review 3.  Genetic Testing in Pediatric Epilepsy.

Authors:  Tristan T Sands; Hyunmi Choi
Journal:  Curr Neurol Neurosci Rep       Date:  2017-05       Impact factor: 5.081

Review 4.  Genetic testing for kidney disease of unknown etiology.

Authors:  Thomas Hays; Emily E Groopman; Ali G Gharavi
Journal:  Kidney Int       Date:  2020-04-24       Impact factor: 10.612

5.  Genomic Sequencing Expansion and Incomplete Penetrance.

Authors:  Joseph T C Shieh
Journal:  Pediatrics       Date:  2019-01       Impact factor: 7.124

6.  Returning a Genomic Result for an Adult-Onset Condition to the Parents of a Newborn: Insights From the BabySeq Project.

Authors:  Ingrid A Holm; Amy McGuire; Stacey Pereira; Heidi Rehm; Robert C Green; Alan H Beggs
Journal:  Pediatrics       Date:  2019-01       Impact factor: 7.124

Review 7.  Challenging the Current Recommendations for Carrier Testing in Children.

Authors:  Grace E VanNoy; Casie A Genetti; Amy L McGuire; Robert C Green; Alan H Beggs; Ingrid A Holm
Journal:  Pediatrics       Date:  2019-01       Impact factor: 7.124

8.  Preconception Carrier Screening by Genome Sequencing: Results from the Clinical Laboratory.

Authors:  Sumit Punj; Yassmine Akkari; Jennifer Huang; Fei Yang; Allison Creason; Christine Pak; Amiee Potter; Michael O Dorschner; Deborah A Nickerson; Peggy D Robertson; Gail P Jarvik; Laura M Amendola; Jennifer Schleit; Dana Kostiner Simpson; Alan F Rope; Jacob Reiss; Tia Kauffman; Marian J Gilmore; Patricia Himes; Benjamin Wilfond; Katrina A B Goddard; C Sue Richards
Journal:  Am J Hum Genet       Date:  2018-05-10       Impact factor: 11.025

9.  Exome sequencing disclosures in pediatric cancer care: Patterns of communication among oncologists, genetic counselors, and parents.

Authors:  Sarah Scollon; Mary A Majumder; Katie Bergstrom; Tao Wang; Amy L McGuire; Jill O Robinson; Amanda M Gutierrez; Caroline H Lee; Susan G Hilsenbeck; Sharon E Plon; D Williams Parsons; Richard L Street
Journal:  Patient Educ Couns       Date:  2018-11-12

10.  A Survey of Rare Epigenetic Variation in 23,116 Human Genomes Identifies Disease-Relevant Epivariations and CGG Expansions.

Authors:  Paras Garg; Bharati Jadhav; Oscar L Rodriguez; Nihir Patel; Alejandro Martin-Trujillo; Miten Jain; Sofie Metsu; Hugh Olsen; Benedict Paten; Beate Ritz; R Frank Kooy; Jozef Gecz; Andrew J Sharp
Journal:  Am J Hum Genet       Date:  2020-09-15       Impact factor: 11.025

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