Literature DB >> 30089813

Precision gene editing technology and applications in nephrology.

Zachary WareJoncas1, Jarryd M Campbell1, Gabriel Martínez-Gálvez2, William A C Gendron1, Michael A Barry3, Peter C Harris3, Caroline R Sussman3, Stephen C Ekker4,5.   

Abstract

The expanding field of precision gene editing is empowering researchers to directly modify DNA. Gene editing is made possible using synonymous technologies: a DNA-binding platform to molecularly locate user-selected genomic sequences and an associated biochemical activity that serves as a functional editor. The advent of accessible DNA-targeting molecular systems, such as zinc-finger nucleases, transcription activator-like effectors (TALEs) and CRISPR-Cas9 gene editing systems, has unlocked the ability to target nearly any DNA sequence with nucleotide-level precision. Progress has also been made in harnessing endogenous DNA repair machineries, such as non-homologous end joining, homology-directed repair and microhomology-mediated end joining, to functionally manipulate genetic sequences. As understanding of how DNA damage results in deletions, insertions and modifications increases, the genome becomes more predictably mutable. DNA-binding platforms such as TALEs and CRISPR can also be used to make locus-specific epigenetic changes and to transcriptionally enhance or suppress genes. Although many challenges remain, the application of precision gene editing technology in the field of nephrology has enabled the generation of new animal models of disease as well as advances in the development of novel therapeutic approaches such as gene therapy and xenotransplantation.

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Year:  2018        PMID: 30089813      PMCID: PMC6591726          DOI: 10.1038/s41581-018-0047-x

Source DB:  PubMed          Journal:  Nat Rev Nephrol        ISSN: 1759-5061            Impact factor:   28.314


  198 in total

1.  Redesigning the DNA-binding specificity of a zinc finger protein: a data base-guided approach.

Authors:  J R Desjarlais; J M Berg
Journal:  Proteins       Date:  1992-02

Review 2.  Genome engineering with zinc-finger nucleases.

Authors:  Dana Carroll
Journal:  Genetics       Date:  2011-08       Impact factor: 4.562

3.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

4.  Decoy receptor 3 inhibits renal mononuclear leukocyte infiltration and apoptosis and prevents progression of IgA nephropathy in mice.

Authors:  Shuk-Man Ka; Tai-Tzu Hsieh; Shih-Hua Lin; Sung-Sen Yang; Chin-Chen Wu; Huey-Kang Sytwu; Ann Chen
Journal:  Am J Physiol Renal Physiol       Date:  2011-09-07

5.  Breaking the code of DNA binding specificity of TAL-type III effectors.

Authors:  Jens Boch; Heidi Scholze; Sebastian Schornack; Angelika Landgraf; Simone Hahn; Sabine Kay; Thomas Lahaye; Anja Nickstadt; Ulla Bonas
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

6.  Exome-wide Association Study Identifies GREB1L Mutations in Congenital Kidney Malformations.

Authors:  Simone Sanna-Cherchi; Kamal Khan; Rik Westland; Priya Krithivasan; Lorraine Fievet; Hila Milo Rasouly; Iuliana Ionita-Laza; Valentina P Capone; David A Fasel; Krzysztof Kiryluk; Sitharthan Kamalakaran; Monica Bodria; Edgar A Otto; Matthew G Sampson; Christopher E Gillies; Virginia Vega-Warner; Katarina Vukojevic; Igor Pediaditakis; Gabriel S Makar; Adele Mitrotti; Miguel Verbitsky; Jeremiah Martino; Qingxue Liu; Young-Ji Na; Vinicio Goj; Gianluigi Ardissino; Maddalena Gigante; Loreto Gesualdo; Magdalena Janezcko; Marcin Zaniew; Cathy Lee Mendelsohn; Shirlee Shril; Friedhelm Hildebrandt; Joanna A E van Wijk; Adela Arapovic; Marijan Saraga; Landino Allegri; Claudia Izzi; Francesco Scolari; Velibor Tasic; Gian Marco Ghiggeri; Anna Latos-Bielenska; Anna Materna-Kiryluk; Shrikant Mane; David B Goldstein; Richard P Lifton; Nicholas Katsanis; Erica E Davis; Ali G Gharavi
Journal:  Am J Hum Genet       Date:  2017-11-02       Impact factor: 11.025

7.  RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes.

Authors:  Alexandra East-Seletsky; Mitchell R O'Connell; David Burstein; Gavin J Knott; Jennifer A Doudna
Journal:  Mol Cell       Date:  2017-05-04       Impact factor: 17.970

8.  Specific targeting of cytosine methylation to DNA sequences in vivo.

Authors:  Alexander E Smith; Kevin G Ford
Journal:  Nucleic Acids Res       Date:  2006-12-20       Impact factor: 16.971

9.  Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins.

Authors:  Morgan L Maeder; James F Angstman; Marcy E Richardson; Samantha J Linder; Vincent M Cascio; Shengdar Q Tsai; Quan H Ho; Jeffry D Sander; Deepak Reyon; Bradley E Bernstein; Joseph F Costello; Miles F Wilkinson; J Keith Joung
Journal:  Nat Biotechnol       Date:  2013-10-09       Impact factor: 54.908

10.  CRISPR/Cas9 systems targeting β-globin and CCR5 genes have substantial off-target activity.

Authors:  Thomas J Cradick; Eli J Fine; Christopher J Antico; Gang Bao
Journal:  Nucleic Acids Res       Date:  2013-08-11       Impact factor: 16.971

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  16 in total

1.  Generation of a caged lentiviral vector through an unnatural amino acid for photo-switchable transduction.

Authors:  Yan Wang; Shuai Li; Zhenyu Tian; Jiaqi Sun; Shuobin Liang; Bo Zhang; Lu Bai; Yuanjie Zhang; Xueying Zhou; Sulong Xiao; Qiang Zhang; Lihe Zhang; Chuanling Zhang; Demin Zhou
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

Review 2.  Epigenetics and epigenomics in diabetic kidney disease and metabolic memory.

Authors:  Mitsuo Kato; Rama Natarajan
Journal:  Nat Rev Nephrol       Date:  2019-06       Impact factor: 28.314

3.  Gene therapy for cystinuria.

Authors:  Yunjin Bai; Yin Tang; Ping Han; Jia Wang
Journal:  Urolithiasis       Date:  2019-01-25       Impact factor: 3.436

Review 4.  Organs-on-chip technology: a tool to tackle genetic kidney diseases.

Authors:  Marta G Valverde; João Faria; Elena Sendino Garví; Manoe J Janssen; Rosalinde Masereeuw; Silvia M Mihăilă
Journal:  Pediatr Nephrol       Date:  2022-03-14       Impact factor: 3.651

Review 5.  Retargeting adenoviruses for therapeutic applications and vaccines.

Authors:  Michael A Barry; Jeffrey D Rubin; Shao-Chia Lu
Journal:  FEBS Lett       Date:  2020-02-03       Impact factor: 4.124

6.  Deploying MMEJ using MENdel in precision gene editing applications for gene therapy and functional genomics.

Authors:  Gabriel Martínez-Gálvez; Parnal Joshi; Iddo Friedberg; Armando Manduca; Stephen C Ekker
Journal:  Nucleic Acids Res       Date:  2021-01-11       Impact factor: 16.971

Review 7.  Tuning up Transcription Factors for Therapy.

Authors:  Attila Becskei
Journal:  Molecules       Date:  2020-04-20       Impact factor: 4.411

Review 8.  Genetic Disorders of the Glomerular Filtration Barrier.

Authors:  Anna S Li; Jack F Ingham; Rachel Lennon
Journal:  Clin J Am Soc Nephrol       Date:  2020-03-23       Impact factor: 8.237

Review 9.  Inherited Tubulopathies of the Kidney: Insights from Genetics.

Authors:  Mallory L Downie; Sergio C Lopez Garcia; Robert Kleta; Detlef Bockenhauer
Journal:  Clin J Am Soc Nephrol       Date:  2020-04-01       Impact factor: 8.237

10.  Enhanced genome editing in human iPSCs with CRISPR-CAS9 by co-targeting ATP1a1.

Authors:  Jui-Tung Liu; James L Corbett; James A Heslop; Stephen A Duncan
Journal:  PeerJ       Date:  2020-05-01       Impact factor: 2.984

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