Literature DB >> 30082468

Fluorescence Imaging Methods to Investigate Translation in Single Cells.

Jeetayu Biswas1, Yang Liu2, Robert H Singer1,3,4, Bin Wu2.   

Abstract

Translation is the fundamental biological process that converts the genetic information in messenger RNAs (mRNAs) into functional proteins. Translation regulation allows cells to control when, where, and how many proteins are synthesized. Much of what we know about translation comes from ensemble approaches that measure the average of many cells. The cellular and molecular heterogeneity in the regulation of translation remains largely elusive. Fluorescence microscopy allows interrogation of biological problems with single-molecule, single-cell sensitivity. In recent years, improved design of reagents and microscopy tools has led to improved spatial and temporal resolution of translation imaging. It is now possible to track global translation in specific subcellular compartments and follow the translation dynamics of single transcripts. Highlighted here is the recent progress in translation imaging with emphasis on in vivo translation dynamics. These tools will be invaluable to the study of translation regulation.
Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved.

Entities:  

Year:  2019        PMID: 30082468      PMCID: PMC6442198          DOI: 10.1101/cshperspect.a032722

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  69 in total

1.  Neuronal RNA granules: a link between RNA localization and stimulation-dependent translation.

Authors:  A M Krichevsky; K S Kosik
Journal:  Neuron       Date:  2001-11-20       Impact factor: 17.173

2.  Dynamic visualization of local protein synthesis in hippocampal neurons.

Authors:  G Aakalu; W B Smith; N Nguyen; C Jiang; E M Schuman
Journal:  Neuron       Date:  2001-05       Impact factor: 17.173

3.  A general approach to detect protein expression in vivo using fluorescent puromycin conjugates.

Authors:  Shelley R Starck; Harry M Green; José Alberola-Ila; Richard W Roberts
Journal:  Chem Biol       Date:  2004-07

Review 4.  Neuronal RNA granules: movers and makers.

Authors:  Michael A Kiebler; Gary J Bassell
Journal:  Neuron       Date:  2006-09-21       Impact factor: 17.173

5.  Fluorescence visualization of newly synthesized proteins in mammalian cells.

Authors:  Kimberly E Beatty; Julie C Liu; Fang Xie; Daniela C Dieterich; Erin M Schuman; Qian Wang; David A Tirrell
Journal:  Angew Chem Int Ed Engl       Date:  2006-11-13       Impact factor: 15.336

6.  Probing gene expression in live cells, one protein molecule at a time.

Authors:  Ji Yu; Jie Xiao; Xiaojia Ren; Kaiqin Lao; X Sunney Xie
Journal:  Science       Date:  2006-03-17       Impact factor: 47.728

7.  LambdaN-GFP: an RNA reporter system for live-cell imaging.

Authors:  Nathalie Daigle; Jan Ellenberg
Journal:  Nat Methods       Date:  2007-07-01       Impact factor: 28.547

8.  Assembling an intermediate filament network by dynamic cotranslation.

Authors:  Lynne Chang; Yaron Shav-Tal; Tatjana Trcek; Robert H Singer; Robert D Goldman
Journal:  J Cell Biol       Date:  2006-02-27       Impact factor: 10.539

Review 9.  RNA granules.

Authors:  Paul Anderson; Nancy Kedersha
Journal:  J Cell Biol       Date:  2006-03-06       Impact factor: 10.539

10.  Visualization of mRNA translation in living cells.

Authors:  Alexis J Rodriguez; Shailesh M Shenoy; Robert H Singer; John Condeelis
Journal:  J Cell Biol       Date:  2006-10-09       Impact factor: 10.539

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  15 in total

Review 1.  Toward a Kinetic Understanding of Eukaryotic Translation.

Authors:  Masaaki Sokabe; Christopher S Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

Review 2.  Approaches for measuring the dynamics of RNA-protein interactions.

Authors:  Donny D Licatalosi; Xuan Ye; Eckhard Jankowsky
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-08-20       Impact factor: 9.957

Review 3.  Ribosome Profiling: Global Views of Translation.

Authors:  Nicholas T Ingolia; Jeffrey A Hussmann; Jonathan S Weissman
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

Review 4.  RNA N6-Methyladenosine and the Regulation of RNA Localization and Function in the Brain.

Authors:  Sachithrani U Madugalle; Kate Meyer; Dan Ohtan Wang; Timothy W Bredy
Journal:  Trends Neurosci       Date:  2020-10-08       Impact factor: 13.837

5.  Localization of a TORC1-eIF4F translation complex during CD8+ T cell activation drives divergent cell fate.

Authors:  Swantje Liedmann; Xueyan Liu; Clifford S Guy; Jeremy Chase Crawford; Diego A Rodriguez; Duygu Kuzuoğlu-Öztürk; Ao Guo; Katherine C Verbist; Jamshid Temirov; Mark J Chen; Davide Ruggero; Hui Zhang; Paul G Thomas; Douglas R Green
Journal:  Mol Cell       Date:  2022-05-20       Impact factor: 19.328

Review 6.  Imaging of DNA and RNA in Living Eukaryotic Cells to Reveal Spatiotemporal Dynamics of Gene Expression.

Authors:  Hanae Sato; Sulagna Das; Robert H Singer; Maria Vera
Journal:  Annu Rev Biochem       Date:  2020-03-16       Impact factor: 23.643

Review 7.  RNA transport from transcription to localized translation: a single molecule perspective.

Authors:  Eugenia Basyuk; Florence Rage; Edouard Bertrand
Journal:  RNA Biol       Date:  2020-11-13       Impact factor: 4.652

Review 8.  The travels of mRNAs in neurons: do they know where they are going?

Authors:  Sulagna Das; Robert H Singer; Young J Yoon
Journal:  Curr Opin Neurobiol       Date:  2019-02-19       Impact factor: 7.070

9.  The structural basis for RNA selectivity by the IMP family of RNA-binding proteins.

Authors:  Jeetayu Biswas; Vivek L Patel; Varun Bhaskar; Jeffrey A Chao; Robert H Singer; Carolina Eliscovich
Journal:  Nat Commun       Date:  2019-09-30       Impact factor: 14.919

10.  Computational design and interpretation of single-RNA translation experiments.

Authors:  Luis U Aguilera; William Raymond; Zachary R Fox; Michael May; Elliot Djokic; Tatsuya Morisaki; Timothy J Stasevich; Brian Munsky
Journal:  PLoS Comput Biol       Date:  2019-10-16       Impact factor: 4.475

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