Literature DB >> 33111627

RNA transport from transcription to localized translation: a single molecule perspective.

Eugenia Basyuk1,2, Florence Rage3, Edouard Bertrand1,3,4.   

Abstract

Transport of mRNAs is an important step of gene expression, which brings the genetic message from the DNA in the nucleus to a precise cytoplasmic location in a regulated fashion. Perturbation of this process can lead to pathologies such as developmental and neurological disorders. In this review, we discuss recent advances in the field of mRNA transport made using single molecule fluorescent imaging approaches. We present an overview of these approaches in fixed and live cells and their input in understanding the key steps of mRNA journey: transport across the nucleoplasm, export through the nuclear pores and delivery to its final cytoplasmic location. This review puts a particular emphasis on the coupling of mRNA transport with translation, such as localization-dependent translational regulation and translation-dependent mRNA localization. We also highlight the recently discovered translation factories, and how cellular and viral RNAs can hijack membrane transport systems to travel in the cytoplasm.

Entities:  

Keywords:  RNA transport; membrane transport; motors; nuclear pores; single molecule imaging; translation

Mesh:

Substances:

Year:  2020        PMID: 33111627      PMCID: PMC8354613          DOI: 10.1080/15476286.2020.1842631

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  189 in total

1.  Dynamics of single mRNPs in nuclei of living cells.

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Journal:  Science       Date:  2004-06-18       Impact factor: 47.728

2.  Dynamics of single mRNP nucleocytoplasmic transport and export through the nuclear pore in living cells.

Authors:  Amir Mor; Shimrit Suliman; Rakefet Ben-Yishay; Sharon Yunger; Yehuda Brody; Yaron Shav-Tal
Journal:  Nat Cell Biol       Date:  2010-05-09       Impact factor: 28.824

3.  Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum.

Authors:  Brook Pyhtila; Tianli Zheng; Patrick J Lager; Jack D Keene; Mary C Reedy; Christopher V Nicchitta
Journal:  RNA       Date:  2008-01-11       Impact factor: 4.942

4.  High efficiency of HIV-1 genomic RNA packaging and heterozygote formation revealed by single virion analysis.

Authors:  Jianbo Chen; Olga Nikolaitchik; Jatinder Singh; Andrew Wright; Craig E Bencsics; John M Coffin; Na Ni; Stephen Lockett; Vinay K Pathak; Wei-Shau Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-23       Impact factor: 11.205

Review 5.  Imaging of DNA and RNA in Living Eukaryotic Cells to Reveal Spatiotemporal Dynamics of Gene Expression.

Authors:  Hanae Sato; Sulagna Das; Robert H Singer; Maria Vera
Journal:  Annu Rev Biochem       Date:  2020-03-16       Impact factor: 23.643

6.  Transcriptional pulsing of a developmental gene.

Authors:  Jonathan R Chubb; Tatjana Trcek; Shailesh M Shenoy; Robert H Singer
Journal:  Curr Biol       Date:  2006-05-23       Impact factor: 10.834

7.  MS2 coat proteins bound to yeast mRNAs block 5' to 3' degradation and trap mRNA decay products: implications for the localization of mRNAs by MS2-MCP system.

Authors:  Jennifer F Garcia; Roy Parker
Journal:  RNA       Date:  2015-06-19       Impact factor: 4.942

8.  Broccoli: rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution.

Authors:  Grigory S Filonov; Jared D Moon; Nina Svensen; Samie R Jaffrey
Journal:  J Am Chem Soc       Date:  2014-11-05       Impact factor: 15.419

9.  Stem-loop RNA labeling can affect nuclear and cytoplasmic mRNA processing.

Authors:  Stephanie Heinrich; Corinne L Sidler; Claus M Azzalin; Karsten Weis
Journal:  RNA       Date:  2016-11-10       Impact factor: 4.942

Review 10.  The landscape of eukaryotic mRNPs.

Authors:  Anthony Khong; Roy Parker
Journal:  RNA       Date:  2019-12-26       Impact factor: 4.942

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Journal:  Nat Commun       Date:  2021-06-08       Impact factor: 14.919

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  2 in total

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