Literature DB >> 30790000

Incorporation of non-standard amino acids into proteins: challenges, recent achievements, and emerging applications.

Xing Jin1, Oh-Jin Park1,2, Seok Hoon Hong3.   

Abstract

The natural genetic code only allows for 20 standard amino acids in protein translation, but genetic code reprogramming enables the incorporation of non-standard amino acids (NSAAs). Proteins containing NSAAs provide enhanced or novel properties and open diverse applications. With increased attention to the recent advancements in synthetic biology, various improved and novel methods have been developed to incorporate single and multiple distinct NSAAs into proteins. However, various challenges remain in regard to NSAA incorporation, such as low yield and misincorporation. In this review, we summarize the recent efforts to improve NSAA incorporation by utilizing orthogonal translational system optimization, cell-free protein synthesis, genomically recoded organisms, artificial codon boxes, quadruplet codons, and orthogonal ribosomes, before closing with a discussion of the emerging applications of NSAA incorporation.

Entities:  

Keywords:  Genetic code expansion; Non-standard amino acids; Orthogonal translational system; Synthetic biology

Mesh:

Substances:

Year:  2019        PMID: 30790000      PMCID: PMC6449208          DOI: 10.1007/s00253-019-09690-6

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  109 in total

1.  Programming peptidomimetic syntheses by translating genetic codes designed de novo.

Authors:  Anthony C Forster; Zhongping Tan; Madhavi N L Nalam; Hening Lin; Hui Qu; Virginia W Cornish; Stephen C Blacklow
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-16       Impact factor: 11.205

2.  Cell-free protein synthesis with prokaryotic combined transcription-translation.

Authors:  James R Swartz; Michael C Jewett; Kim A Woodrow
Journal:  Methods Mol Biol       Date:  2004

3.  Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein.

Authors:  Stéphanie Cabantous; Thomas C Terwilliger; Geoffrey S Waldo
Journal:  Nat Biotechnol       Date:  2004-12-05       Impact factor: 54.908

4.  Reassignment of sense codons in vivo.

Authors:  A James Link; David A Tirrell
Journal:  Methods       Date:  2005-07       Impact factor: 3.608

5.  Multiple incorporation of non-natural amino acids into a single protein using tRNAs with non-standard structures.

Authors:  Takashi Ohtsuki; Taishi Manabe; Masahiko Sisido
Journal:  FEBS Lett       Date:  2005-11-21       Impact factor: 4.124

Review 6.  Beyond the canonical 20 amino acids: expanding the genetic lexicon.

Authors:  Travis S Young; Peter G Schultz
Journal:  J Biol Chem       Date:  2010-02-10       Impact factor: 5.157

Review 7.  Incorporation of unnatural amino acids for synthetic biology.

Authors:  Natalya Voloshchuk; Jin Kim Montclare
Journal:  Mol Biosyst       Date:  2009-09-04

8.  An enhanced system for unnatural amino acid mutagenesis in E. coli.

Authors:  Travis S Young; Insha Ahmad; Jun A Yin; Peter G Schultz
Journal:  J Mol Biol       Date:  2009-10-21       Impact factor: 5.469

9.  Unnatural amino acid mutagenesis of green fluorescent protein.

Authors:  Lei Wang; Jianming Xie; Ashok A Deniz; Peter G Schultz
Journal:  J Org Chem       Date:  2003-01-10       Impact factor: 4.354

10.  Evolved orthogonal ribosomes enhance the efficiency of synthetic genetic code expansion.

Authors:  Kaihang Wang; Heinz Neumann; Sew Y Peak-Chew; Jason W Chin
Journal:  Nat Biotechnol       Date:  2007-06-24       Impact factor: 54.908

View more
  9 in total

Review 1.  Recent advancements in enzyme engineering via site-specific incorporation of unnatural amino acids.

Authors:  Hang-Qin Zhu; Xiao-Ling Tang; Ren-Chao Zheng; Yu-Guo Zheng
Journal:  World J Microbiol Biotechnol       Date:  2021-11-06       Impact factor: 3.312

2.  Computational design and engineering of an Escherichia coli strain producing the nonstandard amino acid para-aminophenylalanine.

Authors:  Ali R Zomorrodi; Colin Hemez; Pol Arranz-Gibert; Terrence Wu; Farren J Isaacs; Daniel Segrè
Journal:  iScience       Date:  2022-06-09

Review 3.  Rebooting life: engineering non-natural nucleic acids, proteins and metabolites in microorganisms.

Authors:  Shriya Hans; Nilesh Kumar; Nisarg Gohil; Khushal Khambhati; Gargi Bhattacharjee; Shalini S Deb; Rupesh Maurya; Vinod Kumar; Shamlan M S Reshamwala; Vijai Singh
Journal:  Microb Cell Fact       Date:  2022-05-28       Impact factor: 6.352

4.  Amber codon is genetically unstable in generation of premature termination codon (PTC)-harbouring Foot-and-mouth disease virus (FMDV) via genetic code expansion.

Authors:  Rongzeng Hao; Kun Ma; Yi Ru; Dan Li; Gaoyuan Song; Bingzhou Lu; Huanan Liu; Yajun Li; Jiaoyan Zhang; Chunping Wu; Guicai Zhang; Haitao Hu; Jianxun Luo; Haixue Zheng
Journal:  RNA Biol       Date:  2021-04-14       Impact factor: 4.652

5.  Exploring protein phosphorylation by combining computational approaches and biochemical methods.

Authors:  Gonzalo Pérez-Mejías; Alejandro Velázquez-Cruz; Alejandra Guerra-Castellano; Blanca Baños-Jaime; Antonio Díaz-Quintana; Katiuska González-Arzola; Miguel Ángel De la Rosa; Irene Díaz-Moreno
Journal:  Comput Struct Biotechnol J       Date:  2020-07-07       Impact factor: 7.271

Review 6.  Site-Specific Incorporation of Unnatural Amino Acids into Escherichia coli Recombinant Protein: Methodology Development and Recent Achievement.

Authors:  Sviatlana Smolskaya; Yaroslav A Andreev
Journal:  Biomolecules       Date:  2019-06-28

Review 7.  Codon usage bias.

Authors:  Sujatha Thankeswaran Parvathy; Varatharajalu Udayasuriyan; Vijaipal Bhadana
Journal:  Mol Biol Rep       Date:  2021-11-25       Impact factor: 2.316

8.  Investigation of β-Substitution Activity of O-Acetylserine Sulfhydrolase from Citrullus vulgaris.

Authors:  Jamorious L Smith; Isa Madrigal Harrison; Craig A Bingman; Andrew R Buller
Journal:  Chembiochem       Date:  2022-06-01       Impact factor: 3.461

9.  Streamlining the preparation of "endotoxin-free" ClearColi cell extract with autoinduction media for cell-free protein synthesis of the therapeutic protein crisantaspase.

Authors:  J Porter Hunt; Emily Long Zhao; Mehran Soltani; Madison Frei; J Andrew D Nelson; Bradley C Bundy
Journal:  Synth Syst Biotechnol       Date:  2019-12-13
  9 in total

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