Literature DB >> 32266578

Incorporation of nonstandard amino acids into proteins: principles and applications.

Tianwen Wang1, Chen Liang1, Hongjv Xu1, Yafei An1, Sha Xiao1, Mengyuan Zheng1, Lu Liu2, Lei Nie3.   

Abstract

The cellular ribosome shows a naturally evolved strong preference for the synthesis of proteins with standard amino acids. An in-depth understanding of the translation process enables scientists to go beyond this natural limitation and engineer translating systems capable of synthesizing proteins with artificially designed and synthesized non-standard amino acids (nsAA) featuring more bulky sidechains. The sidechains can be functional groups, with chosen biophysical or chemical activities, that enable the direct application of these proteins. Alternatively, the sidechains can be designed to contain highly reactive groups: enabling the ready formation of conjugates via a covalent bond between the sidechain and other chemicals or biomolecules. This co-translational incorporation of nsAAs into proteins allows for a vast number of possible applications. In this paper, we first systematically summarized the advances in the engineering of the translation system. Subsequently, we reviewed the extensive applications of these nsAA-containing proteins (after chemical modification) by discussing representative reports on how they can be utilized for different purposes. Finally, we discussed the direction of further studies which could be undertaken to improve the current technology utilized in incorporating nsAAs in order to use them to their full potential and improve accessibility across disciplines.

Keywords:  Nonstandard amino acid; Protein chemical modification; Protein drug improvement; Ribosome engineering; Translating system engineering

Year:  2020        PMID: 32266578     DOI: 10.1007/s11274-020-02837-y

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  107 in total

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Authors:  H Saito; K Watanabe; H Suga
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

2.  Exploring the limits of codon and anticodon size.

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Journal:  Chem Biol       Date:  2002-02

Review 3.  Designer proteins: applications of genetic code expansion in cell biology.

Authors:  Lloyd Davis; Jason W Chin
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-15       Impact factor: 94.444

Review 4.  Unnatural RNA display libraries.

Authors:  Adam Frankel; Shuwei Li; Shelley R Starck; Richard W Roberts
Journal:  Curr Opin Struct Biol       Date:  2003-08       Impact factor: 6.809

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Authors:  J Eyzaguirre
Journal:  Biol Res       Date:  1996       Impact factor: 5.612

Review 6.  Expanding the genetic lexicon: incorporating non-standard amino acids into proteins by ribosome-based synthesis.

Authors:  S A Benner
Journal:  Trends Biotechnol       Date:  1994-05       Impact factor: 19.536

7.  Bio-orthogonal conjugation and enzymatically triggered release of proteins within multi-layered hydrogels.

Authors:  Chen Guo; Heejae Kim; Elisa M Ovadia; Christine M Mourafetis; Mingrui Yang; Wilfred Chen; April M Kloxin
Journal:  Acta Biomater       Date:  2017-04-05       Impact factor: 8.947

8.  Aminoacyl-tRNA synthesis by a resin-immobilized ribozyme.

Authors:  Hiroshi Murakami; Neil J Bonzagni; Hiroaki Suga
Journal:  J Am Chem Soc       Date:  2002-06-19       Impact factor: 15.419

9.  Sortase ligation enables homogeneous GPCR phosphorylation to reveal diversity in β-arrestin coupling.

Authors:  Dean P Staus; Laura M Wingler; Minjung Choi; Biswaranjan Pani; Aashish Manglik; Andrew C Kruse; Robert J Lefkowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-26       Impact factor: 11.205

10.  Efficient Phage Display with Multiple Distinct Non-Canonical Amino Acids Using Orthogonal Ribosome-Mediated Genetic Code Expansion.

Authors:  Benjamí Oller-Salvia; Jason W Chin
Journal:  Angew Chem Int Ed Engl       Date:  2019-07-04       Impact factor: 15.336

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  1 in total

Review 1.  Making Sense of "Nonsense" and More: Challenges and Opportunities in the Genetic Code Expansion, in the World of tRNA Modifications.

Authors:  Olubodun Michael Lateef; Michael Olawale Akintubosun; Olamide Tosin Olaoba; Sunday Ocholi Samson; Malgorzata Adamczyk
Journal:  Int J Mol Sci       Date:  2022-01-15       Impact factor: 5.923

  1 in total

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