Literature DB >> 30022340

Reference Parameters for Protein Hydrogen Exchange Rates.

David Nguyen1, Leland Mayne2, Michael C Phillips3, S Walter Englander2.   

Abstract

The analysis of many hydrogen exchange (HX) experiments depends on knowledge of exchange rates expected for the unstructured protein under the same conditions. We present here some minor adjustments to previously calibrated values and a stringent test of their accuracy. Graphical Abstract ᅟ.

Entities:  

Keywords:  HDX; HX MS; Hydrogen exchange

Mesh：

Substances：

Year:  2018        PMID： 30022340      PMCID： PMC6087487          DOI： 10.1007/s13361-018-2021-z

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN： 1044-0305            Impact factor:   3.109


  13 in total

1.  Measurement of water-amide proton exchange rates in the denatured state of staphylococcal nuclease by a magnetization transfer technique.

Authors:  S Mori; P C van Zijl; D Shortle
Journal:  Proteins       Date:  1997-07

Review 2.  Analytical Aspects of Hydrogen Exchange Mass Spectrometry.

Authors:  John R Engen; Thomas E Wales
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2015-05-29       Impact factor: 10.745

Review 3.  Biological insights from hydrogen exchange mass spectrometry.

Authors:  Sheila S Jaswal
Journal:  Biochim Biophys Acta       Date:  2012-10-29

Review 4.  Mass spectrometry-based methods to study protein architecture and dynamics.

Authors:  Igor A Kaltashov; Cedric E Bobst; Rinat R Abzalimov
Journal:  Protein Sci       Date:  2013-03-26       Impact factor: 6.725

5.  Primary structure effects on peptide group hydrogen exchange.

Authors:  R S Molday; S W Englander; R G Kallen
Journal:  Biochemistry       Date:  1972-01-18       Impact factor: 3.162

6.  Isotope effects in peptide group hydrogen exchange.

Authors:  G P Connelly; Y Bai; M F Jeng; S W Englander
Journal:  Proteins       Date:  1993-09

Review 7.  Hydrogen exchange mass spectrometry for studying protein structure and dynamics.

Authors:  Lars Konermann; Jingxi Pan; Yu-Hong Liu
Journal:  Chem Soc Rev       Date:  2010-12-21       Impact factor: 54.564

8.  Primary structure effects on peptide group hydrogen exchange.

Authors:  Y Bai; J S Milne; L Mayne; S W Englander
Journal:  Proteins       Date:  1993-09

9.  Hydrogen Exchange Mass Spectrometry.

Authors:  Leland Mayne
Journal:  Methods Enzymol       Date:  2015-07-27       Impact factor: 1.600

10.  Mapping Protein-Ligand Interactions with Proteolytic Fragmentation, Hydrogen/Deuterium Exchange-Mass Spectrometry.

Authors:  Elyssia S Gallagher; Jeffrey W Hudgens
Journal:  Methods Enzymol       Date:  2015-10-23       Impact factor: 1.600
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  13 in total

1.  Hydrogen exchange reveals Hsp104 architecture, structural dynamics, and energetics in physiological solution.

Authors:  Xiang Ye; Jiabei Lin; Leland Mayne; James Shorter; S Walter Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-27       Impact factor: 11.205

2.  Modeling the native ensemble of PhuS using enhanced sampling MD and HDX-ensemble reweighting.

Authors:  Kyle C Kihn; Tyree Wilson; Ally K Smith; Richard T Bradshaw; Patrick L Wintrode; Lucy R Forrest; Angela Wilks; Daniel J Deredge
Journal:  Biophys J       Date:  2021-11-10       Impact factor: 4.033

3.  Simple and Fast Maximally Deuterated Control (maxD) Preparation for Hydrogen-Deuterium Exchange Mass Spectrometry Experiments.

Authors:  Daniele Peterle; Thomas E Wales; John R Engen
Journal:  Anal Chem       Date:  2022-07-07       Impact factor: 8.008

Review 4.  Advances in Hydrogen/Deuterium Exchange Mass Spectrometry and the Pursuit of Challenging Biological Systems.

Authors:  Ellie I James; Taylor A Murphree; Clint Vorauer; John R Engen; Miklos Guttman
Journal:  Chem Rev       Date:  2021-09-07       Impact factor: 72.087

5.  Residual Structure of Unfolded Ubiquitin as Revealed by Hydrogen/Deuterium-Exchange 2D NMR.

Authors:  Maho Yagi-Utsumi; Mahesh S Chandak; Saeko Yanaka; Methanee Hiranyakorn; Takashi Nakamura; Koichi Kato; Kunihiro Kuwajima
Journal:  Biophys J       Date:  2020-10-14       Impact factor: 4.033

6.  Investigation of D76N β2-Microglobulin Using Protein Footprinting and Structural Mass Spectrometry.

Authors:  Owen Cornwell; James R Ault; Nicholas J Bond; Sheena E Radford; Alison E Ashcroft
Journal:  J Am Soc Mass Spectrom       Date:  2021-02-15       Impact factor: 3.262

7.  Estimating Constraints for Protection Factors from HDX-MS Data.

Authors:  Simon P Skinner; Gael Radou; Roman Tuma; Jeanine J Houwing-Duistermaat; Emanuele Paci
Journal:  Biophys J       Date:  2019-03-05       Impact factor: 4.033

8.  Interpretation of HDX Data by Maximum-Entropy Reweighting of Simulated Structural Ensembles.

Authors:  Richard T Bradshaw; Fabrizio Marinelli; José D Faraldo-Gómez; Lucy R Forrest
Journal:  Biophys J       Date:  2020-02-15       Impact factor: 4.033

9.  Mechanism of Thimerosal-Induced Structural Destabilization of a Recombinant Rotavirus P[4] Protein Antigen Formulated as a Multi-Dose Vaccine.

Authors:  Kawaljit Kaur; Jian Xiong; Nishant Sawant; Sanjeev Agarwal; John M Hickey; David A Holland; Tarit K Mukhopadhyay; Joseph R Brady; Neil C Dalvie; Mary Kate Tracey; Kerry R Love; J Christopher Love; David D Weis; Sangeeta B Joshi; David B Volkin
Journal:  J Pharm Sci       Date:  2020-12-03       Impact factor: 3.534

10.  Dynamics in natural and designed elastins and their relation to elastic fiber structure and recoil.

Authors:  Ma Faye Charmagne A Carvajal; Jonathan M Preston; Nour M Jamhawi; T Michael Sabo; Shibani Bhattacharya; James M Aramini; Richard J Wittebort; Ronald L Koder
Journal:  Biophys J       Date:  2021-07-31       Impact factor: 3.699
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