Literature DB >> 8234247

Isotope effects in peptide group hydrogen exchange.

G P Connelly1, Y Bai, M F Jeng, S W Englander.   

Abstract

Kinetic and equilibrium isotope effects in peptide group hydrogen exchange reactions were evaluated. Unlike many other reactions, kinetic isotope effects in amide hydrogen exchange are small because exchange pathways are not limited by bond-breaking steps. Rate constants for the acid-catalyzed exchange of peptide group NH, ND, and NT in H2O are essentially identical, but a solvent isotope effect doubles the rate in D2O. Rate constants for base-catalyzed exchange in H2O decrease slowly in the order NH > ND > NT. The alkaline rate constant in D2O is very close to that in H2O when account is taken of the glass electrode pH artifact and the difference in solvent ionization constant. Small equilibrium isotope effects lead to an excess equilibrium accumulation of the heavier isotopes by the peptide group. Results obtained are expressed in terms of rate constants for the random coil polypeptide, poly-DL-alanine, to provide reference rates for protein hydrogen exchange studies as described in Bai et al. [preceding paper in this issued].

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Year:  1993        PMID: 8234247     DOI: 10.1002/prot.340170111

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  125 in total

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2.  Thermal stability of hydrophobic heme pocket variants of oxidized cytochrome c.

Authors:  J R Liggins; T P Lo; G D Brayer; B T Nall
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3.  Hydrogen/deuterium exchange studies of native rabbit MM-CK dynamics.

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Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

4.  The interaction of beta(2)-glycoprotein I domain V with chaperonin GroEL: the similarity with the domain V and membrane interaction.

Authors:  Masayo Gozu; Masaru Hoshino; Takashi Higurashi; Hisao Kato; Yuji Goto
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

5.  Protein hydrogen exchange mechanism: local fluctuations.

Authors:  Haripada Maity; Woon Ki Lim; Jon N Rumbley; S Walter Englander
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

6.  Active site dynamics in NADH oxidase from Thermus thermophilus studied by NMR spin relaxation.

Authors:  Teresa Miletti; Patrick J Farber; Anthony Mittermaier
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

7.  An efficient and inexpensive refrigerated LC system for H/D exchange mass spectrometry.

Authors:  Theodore R Keppel; Martin E Jacques; Robert W Young; Kenneth L Ratzlaff; David D Weis
Journal:  J Am Soc Mass Spectrom       Date:  2011-05-15       Impact factor: 3.109

8.  Many overlapping peptides for protein hydrogen exchange experiments by the fragment separation-mass spectrometry method.

Authors:  Leland Mayne; Zhong-Yuan Kan; Palaniappan Sevugan Chetty; Alec Ricciuti; Benjamin T Walters; S Walter Englander
Journal:  J Am Soc Mass Spectrom       Date:  2011-09-14       Impact factor: 3.109

9.  Staphylococcal nuclease folding intermediate characterized by hydrogen exchange and NMR spectroscopy.

Authors:  M D Jacobs; R O Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-18       Impact factor: 11.205

10.  Water magnetic relaxation dispersion in biological systems: the contribution of proton exchange and implications for the noninvasive detection of cartilage degradation.

Authors:  U Duvvuri; A D Goldberg; J K Kranz; L Hoang; R Reddy; F W Wehrli; A J Wand; S W Englander; J S Leigh
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-16       Impact factor: 11.205

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