Literature DB >> 26791986

Hydrogen Exchange Mass Spectrometry.

Leland Mayne1.   

Abstract

Hydrogen exchange (HX) methods can reveal much about the structure, energetics, and dynamics of proteins. The addition of mass spectrometry (MS) to an earlier fragmentation-separation HX analysis now extends HX studies to larger proteins at high structural resolution and can provide information not available before. This chapter discusses experimental aspects of HX labeling, especially with respect to the use of MS and the analysis of MS data.
© 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Epitope mapping; HDX-MS; HX-MS; Hydrogen exchange; Hydrogen–deuterium exchange; Mass spectrometry; Protein dynamics; Protein folding; Protein stability; Protein structure

Mesh：

Substances：

Year:  2015        PMID： 26791986      PMCID： PMC5858910          DOI： 10.1016/bs.mie.2015.06.035

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


  30 in total

1.  Effect of antibody binding on protein motions studied by hydrogen-exchange labeling and two-dimensional NMR.

Authors:  L Mayne; Y Paterson; D Cerasoli; S W Englander
Journal:  Biochemistry       Date:  1992-11-10       Impact factor: 3.162

2.  Conformer-specific characterization of nonnative protein states using hydrogen exchange and top-down mass spectrometry.

Authors:  Guanbo Wang; Rinat R Abzalimov; Cedric E Bobst; Igor A Kaltashov
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-25       Impact factor: 11.205

Review 3.  Hydrogen exchange and mass spectrometry: A historical perspective.

Authors:  S Walter Englander
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-28       Impact factor: 3.109

4.  Protein hydrogen exchange at residue resolution by proteolytic fragmentation mass spectrometry analysis.

Authors:  Zhong-Yuan Kan; Benjamin T Walters; Leland Mayne; S Walter Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

5.  Hydrogen-tritium exchange.

Authors:  S W Englander; J J Englander
Journal:  Methods Enzymol       Date:  1972       Impact factor: 1.600

6.  Protein folding intermediates: native-state hydrogen exchange.

Authors:  Y Bai; T R Sosnick; L Mayne; S W Englander
Journal:  Science       Date:  1995-07-14       Impact factor: 47.728

7.  An antibody binding site on cytochrome c defined by hydrogen exchange and two-dimensional NMR.

Authors:  Y Paterson; S W Englander; H Roder
Journal:  Science       Date:  1990-08-17       Impact factor: 47.728

8.  A simple test to detect hydrogen/deuterium scrambling during gas-phase peptide fragmentation.

Authors:  Yoshitomo Hamuro; Justine C Tomasso; Stephen J Coales
Journal:  Anal Chem       Date:  2008-07-31       Impact factor: 6.986

Review 9.  Applications of hydrogen/deuterium exchange MS from 2012 to 2014.

Authors:  Gregory F Pirrone; Roxana E Iacob; John R Engen
Journal:  Anal Chem       Date:  2014-11-14       Impact factor: 6.986

10.  Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.

Authors:  Gordon W Slysz; Charles A H Baker; Benjamin M Bozsa; Anthony Dang; Andrew J Percy; Melissa Bennett; David C Schriemer
Journal:  BMC Bioinformatics       Date:  2009-05-27       Impact factor: 3.169
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  20 in total

1.  The case for defined protein folding pathways.

Authors:  S Walter Englander; Leland Mayne
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

2.  Characterization of ELISA Antibody-Antigen Interaction using Footprinting-Mass Spectrometry and Negative Staining Transmission Electron Microscopy.

Authors:  Margaret Lin; Denise Krawitz; Matthew D Callahan; Galahad Deperalta; Aaron T Wecksler
Journal:  J Am Soc Mass Spectrom       Date:  2018-03-06       Impact factor: 3.109

3.  Optimization of Feasibility Stage for Hydrogen/Deuterium Exchange Mass Spectrometry.

Authors:  Yoshitomo Hamuro; Stephen J Coales
Journal:  J Am Soc Mass Spectrom       Date:  2018-01-03       Impact factor: 3.109

4.  Enhanced Local Disorder in a Clinically Elusive von Willebrand Factor Provokes High-Affinity Platelet Clumping.

Authors:  Alexander Tischer; Venkata R Machha; Juan P Frontroth; Maria A Brehm; Tobias Obser; Reinhard Schneppenheim; Leland Mayne; S Walter Englander; Matthew Auton
Journal:  J Mol Biol       Date:  2017-05-19       Impact factor: 5.469

5.  Interlaboratory Comparison of Hydrogen-Deuterium Exchange Mass Spectrometry Measurements of the Fab Fragment of NISTmAb.

Authors:  Jeffrey W Hudgens; Elyssia S Gallagher; Ioannis Karageorgos; Kyle W Anderson; James J Filliben; Richard Y-C Huang; Guodong Chen; George M Bou-Assaf; Alfonso Espada; Michael J Chalmers; Eduardo Harguindey; Hui-Min Zhang; Benjamin T Walters; Jennifer Zhang; John Venable; Caitlin Steckler; Inhee Park; Ansgar Brock; Xiaojun Lu; Ratnesh Pandey; Arun Chandramohan; Ganesh Srinivasan Anand; Sasidhar N Nirudodhi; Justin B Sperry; Jason C Rouse; James A Carroll; Kasper D Rand; Ulrike Leurs; David D Weis; Mohammed A Al-Naqshabandi; Tyler S Hageman; Daniel Deredge; Patrick L Wintrode; Malvina Papanastasiou; John D Lambris; Sheng Li; Sarah Urata
Journal:  Anal Chem       Date:  2019-05-14       Impact factor: 6.986

6.  Chasing Tails: Cathepsin-L Improves Structural Analysis of Histones by HX-MS.

Authors:  Malvina Papanastasiou; James Mullahoo; Katherine C DeRuff; Besnik Bajrami; Ioannis Karageorgos; Stephen E Johnston; Ryan Peckner; Samuel A Myers; Steven A Carr; Jacob D Jaffe
Journal:  Mol Cell Proteomics       Date:  2019-08-13       Impact factor: 5.911

7.  Reference Parameters for Protein Hydrogen Exchange Rates.

Authors:  David Nguyen; Leland Mayne; Michael C Phillips; S Walter Englander
Journal:  J Am Soc Mass Spectrom       Date:  2018-07-18       Impact factor: 3.109

8.  Structural Implications for the Formation and Function of the Complement Effector Protein iC3b.

Authors:  Malvina Papanastasiou; Sophia Koutsogiannaki; Yiannis Sarigiannis; Brian V Geisbrecht; Daniel Ricklin; John D Lambris
Journal:  J Immunol       Date:  2017-03-03       Impact factor: 5.422

9.  Hydrogen exchange reveals Hsp104 architecture, structural dynamics, and energetics in physiological solution.

Authors:  Xiang Ye; Jiabei Lin; Leland Mayne; James Shorter; S Walter Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-27       Impact factor: 11.205

10.  Evidence for the Misfolding of the A1 Domain within Multimeric von Willebrand Factor in Type 2 von Willebrand Disease.

Authors:  Alexander Tischer; Maria A Brehm; Venkata R Machha; Laurie Moon-Tasson; Linda M Benson; Katelynn J Nelton; Rachel R Leger; Tobias Obser; Marina Martinez-Vargas; Steven T Whitten; Dong Chen; Rajiv K Pruthi; H Robert Bergen; Miguel A Cruz; Reinhard Schneppenheim; Matthew Auton
Journal:  J Mol Biol       Date:  2019-10-17       Impact factor: 5.469
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