Literature DB >> 26787741

Nonsense-mediated mRNA decay in humans at a glance.

Tatsuaki Kurosaki1, Lynne E Maquat2.   

Abstract

Nonsense-mediated mRNA decay (NMD) is an mRNA quality-control mechanism that typifies all eukaryotes examined to date. NMD surveys newly synthesized mRNAs and degrades those that harbor a premature termination codon (PTC), thereby preventing the production of truncated proteins that could result in disease in humans. This is evident from dominantly inherited diseases that are due to PTC-containing mRNAs that escape NMD. Although many cellular NMD targets derive from mistakes made during, for example, pre-mRNA splicing and, possibly, transcription initiation, NMD also targets ∼10% of normal physiological mRNAs so as to promote an appropriate cellular response to changing environmental milieus, including those that induce apoptosis, maturation or differentiation. Over the past ∼35 years, a central goal in the NMD field has been to understand how cells discriminate mRNAs that are targeted by NMD from those that are not. In this Cell Science at a Glance and the accompanying poster, we review progress made towards this goal, focusing on human studies and the role of the key NMD factor up-frameshift protein 1 (UPF1).
© 2016. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  NMD; RNA quality control; Superfamily 1 ATP-dependent RNA helicase; UPF1 protein; mRNA surveillance

Mesh:

Substances:

Year:  2016        PMID: 26787741      PMCID: PMC4760306          DOI: 10.1242/jcs.181008

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  131 in total

1.  EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length.

Authors:  Marc Bühler; Silvia Steiner; Fabio Mohn; Alexandra Paillusson; Oliver Mühlemann
Journal:  Nat Struct Mol Biol       Date:  2006-04-23       Impact factor: 15.369

2.  An alternative branch of the nonsense-mediated decay pathway.

Authors:  Wai-Kin Chan; Lulu Huang; Jayanthi P Gudikote; Yao-Fu Chang; J Saadi Imam; James A MacLean; Miles F Wilkinson
Journal:  EMBO J       Date:  2007-03-15       Impact factor: 11.598

3.  Regulation of axon guidance by compartmentalized nonsense-mediated mRNA decay.

Authors:  Dilek Colak; Sheng-Jian Ji; Bo T Porse; Samie R Jaffrey
Journal:  Cell       Date:  2013-06-06       Impact factor: 41.582

4.  Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay.

Authors:  A Yamashita; T Ohnishi; I Kashima; Y Taya; S Ohno
Journal:  Genes Dev       Date:  2001-09-01       Impact factor: 11.361

5.  Novel Upf2p orthologues suggest a functional link between translation initiation and nonsense surveillance complexes.

Authors:  J T Mendell; S M Medghalchi; R G Lake; E N Noensie; H C Dietz
Journal:  Mol Cell Biol       Date:  2000-12       Impact factor: 4.272

6.  At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation.

Authors:  J Zhang; X Sun; Y Qian; J P LaDuca; L E Maquat
Journal:  Mol Cell Biol       Date:  1998-09       Impact factor: 4.272

7.  Cap-binding protein 1-mediated and eukaryotic translation initiation factor 4E-mediated pioneer rounds of translation in yeast.

Authors:  Qinshan Gao; Biswadip Das; Fred Sherman; Lynne E Maquat
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-07       Impact factor: 11.205

8.  Nonsense mutations in the dihydrofolate reductase gene affect RNA processing.

Authors:  G Urlaub; P J Mitchell; C J Ciudad; L A Chasin
Journal:  Mol Cell Biol       Date:  1989-07       Impact factor: 4.272

9.  Nonsense codons can reduce the abundance of nuclear mRNA without affecting the abundance of pre-mRNA or the half-life of cytoplasmic mRNA.

Authors:  J Cheng; L E Maquat
Journal:  Mol Cell Biol       Date:  1993-03       Impact factor: 4.272

10.  Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells.

Authors:  Sébastien Durand; Jens Lykke-Andersen
Journal:  Nat Struct Mol Biol       Date:  2013-05-12       Impact factor: 15.369

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  150 in total

Review 1.  Toward a Kinetic Understanding of Eukaryotic Translation.

Authors:  Masaaki Sokabe; Christopher S Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

Review 2.  Defining nonsense-mediated mRNA decay intermediates in human cells.

Authors:  Tatsuaki Kurosaki; Jason R Myers; Lynne E Maquat
Journal:  Methods       Date:  2018-12-19       Impact factor: 3.608

3.  Translation dysregulation in neurodegenerative disorders.

Authors:  Daryl A Bosco
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-30       Impact factor: 11.205

4.  Identifying Genes Whose Mutant Transcripts Cause Dominant Disease Traits by Potential Gain-of-Function Alleles.

Authors:  Zeynep Coban-Akdemir; Janson J White; Xiaofei Song; Shalini N Jhangiani; Jawid M Fatih; Tomasz Gambin; Yavuz Bayram; Ivan K Chinn; Ender Karaca; Jaya Punetha; Cecilia Poli; Eric Boerwinkle; Chad A Shaw; Jordan S Orange; Richard A Gibbs; Tuuli Lappalainen; James R Lupski; Claudia M B Carvalho
Journal:  Am J Hum Genet       Date:  2018-07-19       Impact factor: 11.025

Review 5.  Nonsense-mediated mRNA Decay and Cancer.

Authors:  Maximilian W Popp; Lynne E Maquat
Journal:  Curr Opin Genet Dev       Date:  2017-11-07       Impact factor: 5.578

Review 6.  The determinants of alternative RNA splicing in human cells.

Authors:  Tatsiana V Ramanouskaya; Vasily V Grinev
Journal:  Mol Genet Genomics       Date:  2017-07-13       Impact factor: 3.291

Review 7.  Upf proteins: highly conserved factors involved in nonsense mRNA mediated decay.

Authors:  Puneet Gupta; Yan-Ruide Li
Journal:  Mol Biol Rep       Date:  2017-12-27       Impact factor: 2.316

8.  Complex preimplantation genetic tests for Robertsonian translocation, HLA, and X-linked hyper IgM syndrome caused by a novel mutation of CD40LG gene.

Authors:  Sexin Huang; Yuping Niu; Jie Li; Ming Gao; Yan Zhang; Junhao Yan; Shuiying Ma; Xuan Gao; Yuan Gao
Journal:  J Assist Reprod Genet       Date:  2020-06-05       Impact factor: 3.412

9.  Incomplete cryptic splicing by an intronic mutation of OCRL in patients with partial phenotypes of Lowe syndrome.

Authors:  Eiji Nakano; Amine Yoshida; Yudai Miyama; Tomoo Yabuuchi; Yuko Kajiho; Shoichiro Kanda; Kenichiro Miura; Akira Oka; Yutaka Harita
Journal:  J Hum Genet       Date:  2020-05-19       Impact factor: 3.172

10.  BRCA1 loses the ring but lords over resistance.

Authors:  Simon N Powell
Journal:  J Clin Invest       Date:  2016-07-25       Impact factor: 14.808

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